PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G090800.1
Common NameB456_003G090800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16332.7 Da    PI: 9.4348
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G090800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.81.4e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien + rqvtfskRrng+lKKA EL++LCdaev viifs+tgkly +ss
  Gorai.003G090800.1  9 KKIENLTSRQVTFSKRRNGLLKKARELCILCDAEVGVIIFSTTGKLYQWSS 59
                        68***********************************************96 PP
2K-box38.54.9e-1480142769
               K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                         ++ ++a+++s + +++ Lk+e+ +L+    +l G++Le Ls+ke qqLe+qL++++ +++++K
  Gorai.003G090800.1  80 SDDQKAEQNSQSFDVSALKEEYLKLRAAYMRLNGKELEGLSFKEVQQLEHQLNEGILSVKEHK 142
                         34566677777889**********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
CDDcd002655.48E-42273No hitNo description
SuperFamilySSF554552.09E-32278IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-884142IPR002487Transcription factor, K-box
PROSITE profilePS512978.44687142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRGKIEIKK IENLTSRQVT FSKRRNGLLK KARELCILCD AEVGVIIFST TGKLYQWSST  60
SMEDTLLRYN RGKVVEQHPS DDQKAEQNSQ SFDVSALKEE YLKLRAAYMR LNGKELEGLS  120
FKEVQQLEHQ LNEGILSVKE HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22169169MEF2C
5f28_B5e-22169169MEF2C
5f28_C5e-22169169MEF2C
5f28_D5e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470659.11e-100PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ392955e-45AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A0D2MLE11e-99A0A0D2MLE1_GOSRA; Uncharacterized protein (Fragment)
TrEMBLA0A2P5SC901e-98A0A2P5SC90_GOSBA; Uncharacterized protein
STRINGGorai.003G090800.11e-100(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-46AGAMOUS-like 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]