PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G082200.1 | ||||||||
Common Name | B456_003G082200, LOC105788240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 36912 Da PI: 5.715 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 112 | 162 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg++ taeeAa +++a+ +l+g Gorai.003G082200.1 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAAMVYDKAAIQLRG 162 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.99E-32 | 112 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 113 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 113 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-37 | 113 | 176 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-12 | 113 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 113 | 170 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.1E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDPCSVSLIK YSEHRNETKL LSPLVNGRVE NKPEMKPRIV RISVTDADAT DSSSDDEEET 60 RMIRRRSRNR VKKFVNEITI ESTNLTESRC VRKKPAAEKL KVKAAAKVPT GKKFRGVRQR 120 PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA MVYDKAAIQL RGQDALTNFT TPPMKDENIS 180 QKQLSSSDYN SGEESHNSYL CSPTSVLRCP SLSIDEVDSQ SFEKSRETRN RPRDVPDDSC 240 CISGENLSDF SEHSSLFPGD IFSSVPSLFD DHTSLHEGFL KDDFGYGYLS SGGDFEFGFG 300 TFSSWQHVDD HFQDIGDLFG SDPPLAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 111 | 169 | 3 | 62 | ATERF1 |
3gcc_A | 7e-21 | 111 | 169 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470485.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
Swissprot | Q9SUQ2 | 5e-64 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A0D2RJ07 | 0.0 | A0A0D2RJ07_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G082200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 5e-59 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G082200.1 |
Entrez Gene | 105788240 |