PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G078000.1 | ||||||||
Common Name | B456_003G078000, LOC105788203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 697aa MW: 77861 Da PI: 6.6522 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77 | 2e-24 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvlt sd++++g +++ +k+a+e+ +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + Gorai.003G078000.1 131 FCKVLTASDTSTHGGFSVLRKHATEClppldMNQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--R 219 99****************************9555556679************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Gorai.003G078000.1 220 GESGELRVGVRR 231 49999*****98 PP | |||||||
2 | Auxin_resp | 105.7 | 5.4e-35 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F++ ++k+++al++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p W++SkWrsLk Gorai.003G078000.1 257 ASHAVSTQTLFVVYYKPRT--SQFIIGLNKYLEALNNKFTVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-YWKDSKWRSLK 336 789***************6..9*************************************************.9********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-40 | 122 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-40 | 124 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-20 | 130 | 231 | No hit | No description |
Pfam | PF02362 | 1.8E-22 | 131 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-23 | 131 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-32 | 257 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.8E-13 | 548 | 668 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.77E-15 | 576 | 659 | No hit | No description |
PROSITE profile | PS51745 | 28.257 | 583 | 664 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 8.0E-4 | 606 | 657 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MANRGGVFSQ TNNVSSEVKG NGGDDLYMEL WKLCAGPLVE APRARERVYY FPQGHMEQLE 60 ASTNQELNQR IPLFNLPSKI LCSVVHIQFL AEQETDEVYA QITLMPEPNQ PEPTTPDACP 120 PEPPKPTVCS FCKVLTASDT STHGGFSVLR KHATECLPPL DMNQATPTQE LVAKDLHGYE 180 WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDSFVFLRG ESGELRVGVR RVARQQSSMP 240 TSVISSQSMH LGVLATASHA VSTQTLFVVY YKPRTSQFII GLNKYLEALN NKFTVGMRFK 300 MRFEGEDSPE RRFSGTIVGV EDFSPYWKDS KWRSLKVQWD EPASIPRPDR VSPWEIEPFA 360 APIPPTLGQP VAAKNKRPRP TAEIPALELP STASAPWNSG VMHTHDLMRR NITAEANRNE 420 NHVIWHMQTE MSSSCSSVLK TQNEGSWLSS PCMSVSKHRF PDARDDSKCA SGWPVLSGLS 480 NPQVNNDSTF DPIEKVKKSE TASSCRLFGI ELINHSASSR QLERTPTQLS TMTASTAEGH 540 HTLSPNNSCQ KSEISKDSNE KQEQLQLQAK EIQSRQSCPS STRSRTKVQM QGVAVGRAVD 600 LAMLEGYDQL IDELEEMFDI KGELRPRNKW EIVYTDDEGD MMLVGDDPWQ EFCSMVRRIF 660 ICLSQDVKKL STGSKLPMAC IEGGEGTVIS SESIEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-176 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 1e-176 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 1e-176 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 379 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585015 | 3e-54 | JX585015.1 Gossypium hirsutum clone NBRI_GE18462 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470427.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X1 | ||||
Refseq | XP_012470428.1 | 0.0 | PREDICTED: auxin response factor 9 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A0D2MKQ5 | 0.0 | A0A0D2MKQ5_GOSRA; Auxin response factor | ||||
STRING | Gorai.003G078000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G078000.1 |
Entrez Gene | 105788203 |
Publications ? help Back to Top | |||
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