PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.003G074300.2 | ||||||||
Common Name | B456_003G074300, LOC105788158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 962aa MW: 105917 Da PI: 6.571 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92 | 4.3e-29 | 585 | 635 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Gorai.003G074300.2 585 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 635 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.894 | 570 | 655 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-26 | 588 | 635 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 9.42E-8 | 887 | 927 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 3.9E-6 | 890 | 925 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 962 aa Download sequence Send to blast |
MCEPVEGNAC SFPSKQYRHH HLEQSQGIMD LDDLDLESSW PLDHQSFLSN PTSPFILASS 60 SEQPCSPLWV FSDDDNNKLG SHPVDCNLLV TCIPNPGNEY PKEENDNRGM PSPFLGQLPL 120 ENPDSYCVIK QRMTQALRYF KESTEQHVLA QVWAPVKNGG RYVLTTSGQP FVLDPHSSGL 180 HQYRMVSLMY MFSVDGESDV QLGLPGRVFR QKLPEWTPNV QYYSSREYSR RDHALHYNVQ 240 GTLALPVFEP SKQSCVGVLE LIMTSPMIHY APEVDKVCKA LEAANLKSSE ILDHPSTKIC 300 NKSRQNALAE ILEILTMVCE THKLPLAQTW VPCRHRNVLA HGGGSKKYCT SFDGSCMGQV 360 CISTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVSGRAFL SHNPCFCADI TQFCKTEYPL 420 VHYARMFGLT SCFAICLQST YTGDDDYVLE FFLPPAIADF NEQQTLLGSI LSTIKQHFQC 480 IKVAPGTKLK ENKGSIEIII ASSDERLSSR LEFIPISPSV KSPPGTNSSP NRGDLQIDSL 540 RKQLSDNHDP ATDGSKVVAS GSQDPVCLPK NEELKKPERK RGKTEKSISL EVLQQYFAGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT KLKHVIESVQ GADEAFDLTS 660 LATSPLPVAV GSISWTTGLN GSHQQNLTNS KPSEPQVDKN DLPTCQMPGS NTQVLVDDQL 720 LGGRTLIQEQ LFSHHNGLSP SLDKGANRFK TGSGSRDESA GTPTSHGSCQ GSPATESAAT 780 KDPLGFSHDQ CSPKLAFHLE ELNISTSFSM PEAPVTAEPR EPFGGMLVED AGSSKDLRNL 840 CPIVAEIGAD ERLPESSWTP PQCSELGIKH TMHTFTQTTP HVTARHGMKS VTIKATYRED 900 IIRFRISLSS GIVELKEEVA KRLKLEECLD VSRSSGSNII RLSVHDTVAN LGSSCESTGE 960 L* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470368.1 | 0.0 | PREDICTED: protein NLP6-like isoform X2 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A0D2QPQ2 | 0.0 | A0A0D2QPQ2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G074300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.003G074300.2 |
Entrez Gene | 105788158 |