PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G074300.1

Common Name

B456_003G074300, LOC105788158

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 987aa MW: 108771 Da PI: 6.2929

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G074300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.4e-29	585	635	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Gorai.003G074300.1 585 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 635 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.894	570	655	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	588	635	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-24	886	975	No hit	No description
PROSITE profile	PS51745	26.356	890	972	IPR000270	PB1 domain
SMART	SM00666	1.2E-26	890	972	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-28	890	972	No hit	No description
Pfam	PF00564	1.4E-18	891	971	IPR000270	PB1 domain
CDD	cd06407	3.27E-39	891	971	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MCEPVEGNAC SFPSKQYRHH HLEQSQGIMD LDDLDLESSW PLDHQSFLSN PTSPFILASS 60 SEQPCSPLWV FSDDDNNKLG SHPVDCNLLV TCIPNPGNEY PKEENDNRGM PSPFLGQLPL 120 ENPDSYCVIK QRMTQALRYF KESTEQHVLA QVWAPVKNGG RYVLTTSGQP FVLDPHSSGL 180 HQYRMVSLMY MFSVDGESDV QLGLPGRVFR QKLPEWTPNV QYYSSREYSR RDHALHYNVQ 240 GTLALPVFEP SKQSCVGVLE LIMTSPMIHY APEVDKVCKA LEAANLKSSE ILDHPSTKIC 300 NKSRQNALAE ILEILTMVCE THKLPLAQTW VPCRHRNVLA HGGGSKKYCT SFDGSCMGQV 360 CISTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVSGRAFL SHNPCFCADI TQFCKTEYPL 420 VHYARMFGLT SCFAICLQST YTGDDDYVLE FFLPPAIADF NEQQTLLGSI LSTIKQHFQC 480 IKVAPGTKLK ENKGSIEIII ASSDERLSSR LEFIPISPSV KSPPGTNSSP NRGDLQIDSL 540 RKQLSDNHDP ATDGSKVVAS GSQDPVCLPK NEELKKPERK RGKTEKSISL EVLQQYFAGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT KLKHVIESVQ GADEAFDLTS 660 LATSPLPVAV GSISWTTGLN GSHQQNLTNS KPSEPQVDKN DLPTCQMPGS NTQVLVDDQL 720 LGGRTLIQEQ LFSHHNGLSP SLDKGANRFK TGSGSRDESA GTPTSHGSCQ GSPATESAAT 780 KDPLGFSHDQ CSPKLAFHLE ELNISTSFSM PEAPVTAEPR EPFGGMLVED AGSSKDLRNL 840 CPIVAEIGAD ERLPESSWTP PQCSELGIKH TMHTFTQTTP HVTARHGMKS VTIKATYRED 900 IIRFRISLSS GIVELKEEVA KRLKLEVGTF DIKYLDDDNE WVLIACDADL QECLDVSRSS 960 GSNIIRLSVH DTVANLGSSC ESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MCEPVEGNAC SFPSKQYRHH HLEQSQGIMD LDDLDLESSW PLDHQSFLSN PTSPFILASS  60
SEQPCSPLWV FSDDDNNKLG SHPVDCNLLV TCIPNPGNEY PKEENDNRGM PSPFLGQLPL  120
ENPDSYCVIK QRMTQALRYF KESTEQHVLA QVWAPVKNGG RYVLTTSGQP FVLDPHSSGL  180
HQYRMVSLMY MFSVDGESDV QLGLPGRVFR QKLPEWTPNV QYYSSREYSR RDHALHYNVQ  240
GTLALPVFEP SKQSCVGVLE LIMTSPMIHY APEVDKVCKA LEAANLKSSE ILDHPSTKIC  300
NKSRQNALAE ILEILTMVCE THKLPLAQTW VPCRHRNVLA HGGGSKKYCT SFDGSCMGQV  360
CISTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVSGRAFL SHNPCFCADI TQFCKTEYPL  420
VHYARMFGLT SCFAICLQST YTGDDDYVLE FFLPPAIADF NEQQTLLGSI LSTIKQHFQC  480
IKVAPGTKLK ENKGSIEIII ASSDERLSSR LEFIPISPSV KSPPGTNSSP NRGDLQIDSL  540
RKQLSDNHDP ATDGSKVVAS GSQDPVCLPK NEELKKPERK RGKTEKSISL EVLQQYFAGS  600
LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT KLKHVIESVQ GADEAFDLTS  660
LATSPLPVAV GSISWTTGLN GSHQQNLTNS KPSEPQVDKN DLPTCQMPGS NTQVLVDDQL  720
LGGRTLIQEQ LFSHHNGLSP SLDKGANRFK TGSGSRDESA GTPTSHGSCQ GSPATESAAT  780
KDPLGFSHDQ CSPKLAFHLE ELNISTSFSM PEAPVTAEPR EPFGGMLVED AGSSKDLRNL  840
CPIVAEIGAD ERLPESSWTP PQCSELGIKH TMHTFTQTTP HVTARHGMKS VTIKATYRED  900
IIRFRISLSS GIVELKEEVA KRLKLEVGTF DIKYLDDDNE WVLIACDADL QECLDVSRSS  960
GSNIIRLSVH DTVANLGSSC ESTGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470366.1	0.0	PREDICTED: protein NLP6-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0D2QGX7	0.0	A0A0D2QGX7_GOSRA; Uncharacterized protein
STRING	Gorai.003G074300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Gorai.003G074300.1
Entrez Gene	105788158

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]