PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G073600.1
Common NameB456_003G073600, LOC105788151
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 399aa    MW: 44380.5 Da    PI: 8.469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G073600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.72.1e-32101205199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae+h    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Gorai.003G073600.1 101 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvG 191
                         89***************************966778999*************************************************6669 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Gorai.003G073600.1 192 ElGKHRLFIDWRRR 205
                         99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-4292213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3098206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2799188No hitNo description
PROSITE profilePS5086314.649101206IPR003340B3 DNA binding domain
PfamPF023629.8E-30101205IPR003340B3 DNA binding domain
SMARTSM010198.9E-23101206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDFGFNEEGN KFPFSYSSSS SSPSSSSSQH KTQMAPPLSN TRWEAQAHQI HDGHHRQMSP  60
NWLNNRYEPE EDNEAATATA STEADSTLSA SAANIEKEHL FDKVVTPSDV GKLNRLVIPK  120
QHAEKHFPLD SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA  180
GDIVSFQRGV GELGKHRLFI DWRRRPDGPD PVSFHPHTHH LSLHRSNTPW SPLLMRPPPT  240
ARDRFQLSQI NPLNRNSYYG GFPTGNNVVN PGGTMGSVLF FRSAAAPTME WQQQPGGVVE  300
PIVFDSVPVV QGTGAAAAKR LRLFGVNMEC PIPESHNPDM LSTTTIPNAT MASQNPQLSS  360
SSQHPLQLRL YNGTPVLPPI DFLSANKGKA SFSLDFDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-65962063114B3 domain-containing transcription factor NGA1
5os9_B7e-65962063114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470360.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR94e-75Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D2MKI10.0A0A0D2MKI1_GOSRA; Uncharacterized protein
STRINGGorai.003G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-74B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]