PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G068000.5

Common Name

B456_003G068000, LOC105788088

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 973aa MW: 108290 Da PI: 8.0549

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G068000.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	177	198	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H Gorai.003G068000.5 177 TQLCKDFMA-GRCRRGSQCHFLH 198 78*****.*********** PP
2	zf-CCCH	21.3	4.8e-07	240	259	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G C++G++C+FaH+ Gorai.003G068000.5 240 CTDYLK-GNCRRGASCRFAHD 259 9***.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	174	200	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.009	174	201	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-8	176	199	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-5	176	199	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	177	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-4	234	260	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.906	234	261	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-5	237	259	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.5E-5	240	259	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	298	325	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.28	298	324	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-5	301	323	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MSGSRKRGSK WNSKEEQQYS LENVRDKAWS AKGSAPFHDR ESEHGYFSAE VGRKDKWSVV 60 GVSDMMKSKH GMPSRESLHG SRVGEKDDNN DFVKNWKTAT PWDGDETYSM KMSPGLDDWR 120 LKKRHSSPKG DWNGSHRSRS RSWSRSRSIS RSRSPVRSVR WQSGLHERTI NRSGVSTQLC 180 KDFMAGRCRR GSQCHFLHQD IQSREDGWDN RQKRAGVSKY ITHDDCKDYL VKSGRSTDCC 240 TDYLKGNCRR GASCRFAHDG ATDGFSRRTT NEISSERENT KRNRIRTPDR DGEREARRSS 300 DIPCKFFASG NCHNGKYCRF SHHGQARASP DRRSRGDRGV WCPSSINVDR LQDGPTLRDT 360 DASFNVNKSW NAPERSYANV INEAEIPWTG PKWSDLDASN DANNSWTGSK WSDAEASNDA 420 NNSWTGSKWS DTGAYLGATK FSKDTIGKKG ASEPRFSNWS MDEKWQHNYD VSGKNIEADV 480 QYKKVDIDKD EQTPRKIENS GVNIGVSEPK GAEESLGDME MSPEWNYKIQ SSIKKELSHG 540 SKPALVETLL HSQERNITEA ASDQVHDGLA ALPMLTEKSN VHQDHLMRCS SGVALPCVSN 600 ALNTTSNSHI VLNFSINNTP LPSFDQPGPS PSTLPCSNLN AVGQSQVTIP SNEVTMEDAQ 660 NGLLFQEEKR SNELNIGDAN VLHGNSGSKS TQTMVSNEQL TQLTNLSASL AQLFGQGQQL 720 PLLHAALNAH NGMQVTSIAN SGGHIEPDSM PNLQPDQDIT FPKQYDPISD SIEPAKKQGT 780 DTKPLGFSIQ PVAEKNTDGQ PELSANKLLP SSLLCSNNDD DYHNDLSSRR EPDFNSHKPN 840 QLEPVASSEA KKKNEGVEET KKAEGENGPS ESGDADDKTD EAKKNKDTKG IRAFKFALVE 900 FVKDLLKPTW KEGQIGKEAY KNIVKKVVDK VIATVQGTNI PQTPEKIDQY LSFSKPKLSK 960 LVQAYVEKFQ KS*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MSGSRKRGSK WNSKEEQQYS LENVRDKAWS AKGSAPFHDR ESEHGYFSAE VGRKDKWSVV  60
GVSDMMKSKH GMPSRESLHG SRVGEKDDNN DFVKNWKTAT PWDGDETYSM KMSPGLDDWR  120
LKKRHSSPKG DWNGSHRSRS RSWSRSRSIS RSRSPVRSVR WQSGLHERTI NRSGVSTQLC  180
KDFMAGRCRR GSQCHFLHQD IQSREDGWDN RQKRAGVSKY ITHDDCKDYL VKSGRSTDCC  240
TDYLKGNCRR GASCRFAHDG ATDGFSRRTT NEISSERENT KRNRIRTPDR DGEREARRSS  300
DIPCKFFASG NCHNGKYCRF SHHGQARASP DRRSRGDRGV WCPSSINVDR LQDGPTLRDT  360
DASFNVNKSW NAPERSYANV INEAEIPWTG PKWSDLDASN DANNSWTGSK WSDAEASNDA  420
NNSWTGSKWS DTGAYLGATK FSKDTIGKKG ASEPRFSNWS MDEKWQHNYD VSGKNIEADV  480
QYKKVDIDKD EQTPRKIENS GVNIGVSEPK GAEESLGDME MSPEWNYKIQ SSIKKELSHG  540
SKPALVETLL HSQERNITEA ASDQVHDGLA ALPMLTEKSN VHQDHLMRCS SGVALPCVSN  600
ALNTTSNSHI VLNFSINNTP LPSFDQPGPS PSTLPCSNLN AVGQSQVTIP SNEVTMEDAQ  660
NGLLFQEEKR SNELNIGDAN VLHGNSGSKS TQTMVSNEQL TQLTNLSASL AQLFGQGQQL  720
PLLHAALNAH NGMQVTSIAN SGGHIEPDSM PNLQPDQDIT FPKQYDPISD SIEPAKKQGT  780
DTKPLGFSIQ PVAEKNTDGQ PELSANKLLP SSLLCSNNDD DYHNDLSSRR EPDFNSHKPN  840
QLEPVASSEA KKKNEGVEET KKAEGENGPS ESGDADDKTD EAKKNKDTKG IRAFKFALVE  900
FVKDLLKPTW KEGQIGKEAY KNIVKKVVDK VIATVQGTNI PQTPEKIDQY LSFSKPKLSK  960
LVQAYVEKFQ KS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470261.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
Refseq	XP_012470262.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
TrEMBL	A0A0D2QP80	0.0	A0A0D2QP80_GOSRA; Uncharacterized protein
STRING	Gorai.003G068000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-13	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G068000.5
Entrez Gene	105788088

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]