PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.003G068000.2 | ||||||||
Common Name | B456_003G068000, LOC105788088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 973aa MW: 108290 Da PI: 8.0549 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.2e-09 | 177 | 198 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H Gorai.003G068000.2 177 TQLCKDFMA-GRCRRGSQCHFLH 198 78*******.************* PP | |||||||
2 | zf-CCCH | 21.3 | 4.8e-07 | 240 | 259 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G C++G++C+FaH+ Gorai.003G068000.2 240 CTDYLK-GNCRRGASCRFAHD 259 9*****.*************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.5E-5 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-8 | 176 | 199 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-5 | 176 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 177 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-4 | 234 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.906 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 237 | 259 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.5E-5 | 240 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.28 | 298 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-5 | 301 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 973 aa Download sequence Send to blast |
MSGSRKRGSK WNSKEEQQYS LENVRDKAWS AKGSAPFHDR ESEHGYFSAE VGRKDKWSVV 60 GVSDMMKSKH GMPSRESLHG SRVGEKDDNN DFVKNWKTAT PWDGDETYSM KMSPGLDDWR 120 LKKRHSSPKG DWNGSHRSRS RSWSRSRSIS RSRSPVRSVR WQSGLHERTI NRSGVSTQLC 180 KDFMAGRCRR GSQCHFLHQD IQSREDGWDN RQKRAGVSKY ITHDDCKDYL VKSGRSTDCC 240 TDYLKGNCRR GASCRFAHDG ATDGFSRRTT NEISSERENT KRNRIRTPDR DGEREARRSS 300 DIPCKFFASG NCHNGKYCRF SHHGQARASP DRRSRGDRGV WCPSSINVDR LQDGPTLRDT 360 DASFNVNKSW NAPERSYANV INEAEIPWTG PKWSDLDASN DANNSWTGSK WSDAEASNDA 420 NNSWTGSKWS DTGAYLGATK FSKDTIGKKG ASEPRFSNWS MDEKWQHNYD VSGKNIEADV 480 QYKKVDIDKD EQTPRKIENS GVNIGVSEPK GAEESLGDME MSPEWNYKIQ SSIKKELSHG 540 SKPALVETLL HSQERNITEA ASDQVHDGLA ALPMLTEKSN VHQDHLMRCS SGVALPCVSN 600 ALNTTSNSHI VLNFSINNTP LPSFDQPGPS PSTLPCSNLN AVGQSQVTIP SNEVTMEDAQ 660 NGLLFQEEKR SNELNIGDAN VLHGNSGSKS TQTMVSNEQL TQLTNLSASL AQLFGQGQQL 720 PLLHAALNAH NGMQVTSIAN SGGHIEPDSM PNLQPDQDIT FPKQYDPISD SIEPAKKQGT 780 DTKPLGFSIQ PVAEKNTDGQ PELSANKLLP SSLLCSNNDD DYHNDLSSRR EPDFNSHKPN 840 QLEPVASSEA KKKNEGVEET KKAEGENGPS ESGDADDKTD EAKKNKDTKG IRAFKFALVE 900 FVKDLLKPTW KEGQIGKEAY KNIVKKVVDK VIATVQGTNI PQTPEKIDQY LSFSKPKLSK 960 LVQAYVEKFQ KS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470261.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2 | ||||
Refseq | XP_012470262.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2 | ||||
TrEMBL | A0A0D2QP80 | 0.0 | A0A0D2QP80_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G068000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-13 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.003G068000.2 |
Entrez Gene | 105788088 |
Publications ? help Back to Top | |||
---|---|---|---|
|