PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G068000.10

Common Name

B456_003G068000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 790aa MW: 87215.1 Da PI: 6.5145

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G068000.10	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	57	76	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++++ G C++G++C+FaH+ Gorai.003G068000.10 57 CTDYLK-GNCRRGASCRFAHD 76 9***.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.483	1	18	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	83	1	17	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.906	51	78	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-4	51	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	54	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	57	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	115	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.28	115	141	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-5	118	140	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MAGRCRRGSQ CHFLHQDIQS REDGWDNRQK RAGVSKYITH DDCKDYLVKS GRSTDCCTDY 60 LKGNCRRGAS CRFAHDGATD GFSRRTTNEI SSERENTKRN RIRTPDRDGE REARRSSDIP 120 CKFFASGNCH NGKYCRFSHH GQARASPDRR SRGDRGVWCP SSINVDRLQD GPTLRDTDAS 180 FNVNKSWNAP ERSYANVINE AEIPWTGPKW SDLDASNDAN NSWTGSKWSD AEASNDANNS 240 WTGSKWSDTG AYLGATKFSK DTIGKKGASE PRFSNWSMDE KWQHNYDVSG KNIEADVQYK 300 KVDIDKDEQT PRKIENSGVN IGVSEPKGAE ESLGDMEMSP EWNYKIQSSI KKELSHGSKP 360 ALVETLLHSQ ERNITEAASD QVHDGLAALP MLTEKSNVHQ DHLMRCSSGV ALPCVSNALN 420 TTSNSHIVLN FSINNTPLPS FDQPGPSPST LPCSNLNAVG QSQVTIPSNE VTMEDAQNGL 480 LFQEEKRSNE LNIGDANVLH GNSGSKSTQT MVSNEQLTQL TNLSASLAQL FGQGQQLPLL 540 HAALNAHNGM QVTSIANSGG HIEPDSMPNL QPDQDITFPK QYDPISDSIE PAKKQGTDTK 600 PLGFSIQPVA EKNTDGQPEL SANKLLPSSL LCSNNDDDYH NDLSSRREPD FNSHKPNQLE 660 PVASSEAKKK NEGVEETKKA EGENGPSESG DADDKTDEAK KNKDTKGIRA FKFALVEFVK 720 DLLKPTWKEG QIGKEAYKNI VKKVVDKVIA TVQGTNIPQT PEKIDQYLSF SKPKLSKLVQ 780 AYVEKFQKS*

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MAGRCRRGSQ CHFLHQDIQS REDGWDNRQK RAGVSKYITH DDCKDYLVKS GRSTDCCTDY  60
LKGNCRRGAS CRFAHDGATD GFSRRTTNEI SSERENTKRN RIRTPDRDGE REARRSSDIP  120
CKFFASGNCH NGKYCRFSHH GQARASPDRR SRGDRGVWCP SSINVDRLQD GPTLRDTDAS  180
FNVNKSWNAP ERSYANVINE AEIPWTGPKW SDLDASNDAN NSWTGSKWSD AEASNDANNS  240
WTGSKWSDTG AYLGATKFSK DTIGKKGASE PRFSNWSMDE KWQHNYDVSG KNIEADVQYK  300
KVDIDKDEQT PRKIENSGVN IGVSEPKGAE ESLGDMEMSP EWNYKIQSSI KKELSHGSKP  360
ALVETLLHSQ ERNITEAASD QVHDGLAALP MLTEKSNVHQ DHLMRCSSGV ALPCVSNALN  420
TTSNSHIVLN FSINNTPLPS FDQPGPSPST LPCSNLNAVG QSQVTIPSNE VTMEDAQNGL  480
LFQEEKRSNE LNIGDANVLH GNSGSKSTQT MVSNEQLTQL TNLSASLAQL FGQGQQLPLL  540
HAALNAHNGM QVTSIANSGG HIEPDSMPNL QPDQDITFPK QYDPISDSIE PAKKQGTDTK  600
PLGFSIQPVA EKNTDGQPEL SANKLLPSSL LCSNNDDDYH NDLSSRREPD FNSHKPNQLE  660
PVASSEAKKK NEGVEETKKA EGENGPSESG DADDKTDEAK KNKDTKGIRA FKFALVEFVK  720
DLLKPTWKEG QIGKEAYKNI VKKVVDKVIA TVQGTNIPQT PEKIDQYLSF SKPKLSKLVQ  780
AYVEKFQKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470253.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470254.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470255.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470256.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470257.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470258.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470259.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470260.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1
Refseq	XP_012470261.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
Refseq	XP_012470262.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X2
TrEMBL	A0A0D2QP83	0.0	A0A0D2QP83_GOSRA; Uncharacterized protein
STRING	Gorai.003G068000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-13	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G068000.10

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]