PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G063900.1
Common NameB456_003G063900, LOC105788046
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 265aa    MW: 29205.1 Da    PI: 8.2253
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G063900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK672.9e-211661348
              RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
                        +++s++d++ +Fslp+ dAA++Lg+c++ LK+iCR++G++RWPhRk
  Gorai.003G063900.1 16 QSLSFDDIADFFSLPLDDAASTLGICTSDLKKICRENGLDRWPHRK 61
                        789******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.982184IPR003035RWP-RK domain
PfamPF020422.8E-191862IPR003035RWP-RK domain
Gene3DG3DSA:4.10.60.102.1E-490114IPR001878Zinc finger, CCHC-type
SuperFamilySSF577564.64E-7103137IPR001878Zinc finger, CCHC-type
SMARTSM003430.92103119IPR001878Zinc finger, CCHC-type
PfamPF000980.0028122136IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.104.4E-12122165IPR001878Zinc finger, CCHC-type
SMARTSM003430.0076122138IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.471123136IPR001878Zinc finger, CCHC-type
SuperFamilySSF577565.96E-9143184IPR001878Zinc finger, CCHC-type
PfamPF000981.5E-5148164IPR001878Zinc finger, CCHC-type
SMARTSM003436.2E-4148164IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.241149164IPR001878Zinc finger, CCHC-type
SMARTSM003430.31167183IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.4E-6168202IPR001878Zinc finger, CCHC-type
PfamPF000980.0047186202IPR001878Zinc finger, CCHC-type
SMARTSM003430.064186202IPR001878Zinc finger, CCHC-type
SuperFamilySSF577568.37E-10210254IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.2E-11213252IPR001878Zinc finger, CCHC-type
PfamPF000981.5E-6217231IPR001878Zinc finger, CCHC-type
SMARTSM003430.0014217233IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.114218231IPR001878Zinc finger, CCHC-type
PfamPF139172.7E-4236256No hitNo description
SMARTSM003430.02236252IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.109237252IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSLKHHHNSN SAASAQSLSF DDIADFFSLP LDDAASTLGI CTSDLKKICR ENGLDRWPHR  60
KFLAGKSVEE IKRHAARERR EFAELSKAHR QSHIAVECNS TTMCWNCKEP GHLAGQFPYE  120
PVCNMCGKMG HLAQDCLNPR LPAHDARLCN NCNKAGHFAA DCTNEKACNN CHKIGHLGHD  180
CHNKPVCNIC NISGHVARQC AKSKLSSVIG GHFRDIVCRN CGQPGHISQD CVSIVICSNC  240
GGRGHLHYEC PSARMYDRSG VRRY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470177.10.0PREDICTED: zinc finger protein GIS2-like
TrEMBLA0A0D2QP050.0A0A0D2QP05_GOSRA; Uncharacterized protein
STRINGGorai.003G063900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-10NIN like protein 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]