PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G057700.1
Common NameB456_003G057700, LOC105787984
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 338aa    MW: 36939.8 Da    PI: 8.8406
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G057700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.6e-2592136145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Gorai.003G057700.1  92 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 136
                         79****************************************986 PP
2QLQ64.33.1e-223066137
                 QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Gorai.003G057700.1 30 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 66
                        89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-123066IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-163165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.4983166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76292136IPR014977WRC domain
PfamPF088793.9E-2193135IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNSGGGGGGG GVGGGGAGSG GGGMMAIRTS PFTVSQWQEL EHQALIFKYM MAGLPVPPDL  60
VLPIQKSFES ISHRFFHHPT MGYCSFYGKK VDPEPGRCRR TDGKKWRCSK DAYPDSKYCE  120
RHMHRGRNRS RKPVESQTMA QSSSTVTSLT VSGNSGGTGS FQSLPLHAFS GSQQVTASGT  180
NQSHYHMESI PYGIPSKDYR YLQGVKPEVG EHSFFSEASG SNRGFQIDTQ QENAWPVTQS  240
RLSSFPQSKP SGNPSMLQND YPQHLFLSEF NSGEPVKHEG RSLRPFFDEW PKTRDSWSAL  300
EDERSNQTSF STTQLSISIP MASPDFSTTS SRSPHAS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470089.10.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY47e-88GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0D2NWZ80.0A0A0D2NWZ8_GOSRA; Uncharacterized protein
STRINGGorai.003G057700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-46growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]