PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G054100.1
Common NameB456_003G054100, LOC105789798
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 332aa    MW: 37418.2 Da    PI: 7.0065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G054100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.1e-191764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Gorai.003G054100.1 17 KGPWTPEEDRILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 64
                        79********************************************97 PP

2Myb_DNA-binding56.27.6e-1870115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr+++eE+  ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.003G054100.1  70 RGRFSEEEEHTIINLHASLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 115
                         89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-251167IPR009057Homeodomain-like
PROSITE profilePS5129418.6571264IPR017930Myb domain
SuperFamilySSF466892.4E-3114111IPR009057Homeodomain-like
SMARTSM007172.6E-151666IPR001005SANT/Myb domain
PfamPF002492.4E-171764IPR001005SANT/Myb domain
CDDcd001673.06E-121964No hitNo description
PROSITE profilePS5129426.84865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2768119IPR009057Homeodomain-like
SMARTSM007172.3E-1569117IPR001005SANT/Myb domain
PfamPF002491.6E-1670115IPR001005SANT/Myb domain
CDDcd001671.29E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMGRPPPCSR DKNGLKKGPW TPEEDRILVD YIQRHGHGSW RALPKLAGLN RCGKSCRLRW  60
TNYLRPDIKR GRFSEEEEHT IINLHASLGN KWSAIATHLP GRTDNEIKNF WNTHLRKKLL  120
QMGIDPVTHR PRTDLNILPN LPQLLAAANF TNLMMSNIPL DAAHLAKLQL LHNIIQVLGT  180
TPTMEALNFL AGPTFGENHE FSNLSLGFAP QELTQLQSNL LNLEAPQQHQ PEVTEYHNQP  240
MKDSNNHQFP SLSPANIPPP LTQSQLPALV PASPERRPQT ENKNINPINI SNPSSTSTTF  300
EGWGDLMDDE ESDSYWRDII DQASSQPWPF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281511925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472605.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z21e-85MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D2NWQ50.0A0A0D2NWQ5_GOSRA; Uncharacterized protein
STRINGGorai.003G054100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-98myb domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]