PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G053300.3
Common NameB456_003G053300, LOC105787939
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 503aa    MW: 55507.8 Da    PI: 6.5775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G053300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Gorai.003G053300.3  24 FLSKTYDVVDDPSTNSVISWSSANNSFVVWKVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Gorai.003G053300.3 106 LLKTISRRKP 115
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3419113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5920113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDSLHDSISA ANAVATNGNT VPPFLSKTYD VVDDPSTNSV ISWSSANNSF VVWKVPEFSR  60
DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI SRRKPANVHG  120
NQQPQVHSSA VGACIEVGTF GLEEEVERLK RDKNVLMQEL VRLRQQQQAT DNQLQAVGQR  180
VQVMEQRQQQ MMSFLAKAMQ SPGFLSQLVQ QQNESNRHLT GGNKKRRLSR QDEENLTGEH  240
GTIFPNRRIV KFQPSLNEAA KAMLHQILKM NTSPRLEPSI DNPDAFMIDG IPPSNALDSR  300
SCSSRISGVT LSEVPPASGQ SYLQAESGFP NSCPCTATHL TTESTNSGKI SDINQHKSQK  360
AAVFPTVPHM QGVVTDNDVG FTNASSGGGS QRVNAEYIDP VSAILNGARP IQTDDFSSDR  420
DMDMLLDGTP KLPAISDVFW EQFLTTSPPS GDSDEINSSS PENGASCEPE LLLGKNNGRD  480
RIQHTNHLTE QMGLLTTDNR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-261511320129Heat shock factor protein 1
5d5v_B7e-261511320129Heat shock factor protein 1
5d5v_D7e-261511320129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024460.0KJ702446.1 Gossypium hirsutum heat shock transcription factor (HSF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470001.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470002.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470003.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470004.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470005.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470006.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470008.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470009.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_012470010.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotO818211e-158HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0D2QG070.0A0A0D2QG07_GOSRA; Uncharacterized protein
STRINGGorai.003G053300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-137heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  4. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]