PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G053300.1 | ||||||||
Common Name | B456_003G053300, LOC105787939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 503aa MW: 55507.8 Da PI: 6.5775 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 24 | 115 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++++++isws+ +nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ Gorai.003G053300.1 24 FLSKTYDVVDDPSTNSVISWSSANNSFVVWKVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 105 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i r+k Gorai.003G053300.1 106 LLKTISRRKP 115 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-38 | 14 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.75E-34 | 19 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.1E-59 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.0E-31 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MDSLHDSISA ANAVATNGNT VPPFLSKTYD VVDDPSTNSV ISWSSANNSF VVWKVPEFSR 60 DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKTI SRRKPANVHG 120 NQQPQVHSSA VGACIEVGTF GLEEEVERLK RDKNVLMQEL VRLRQQQQAT DNQLQAVGQR 180 VQVMEQRQQQ MMSFLAKAMQ SPGFLSQLVQ QQNESNRHLT GGNKKRRLSR QDEENLTGEH 240 GTIFPNRRIV KFQPSLNEAA KAMLHQILKM NTSPRLEPSI DNPDAFMIDG IPPSNALDSR 300 SCSSRISGVT LSEVPPASGQ SYLQAESGFP NSCPCTATHL TTESTNSGKI SDINQHKSQK 360 AAVFPTVPHM QGVVTDNDVG FTNASSGGGS QRVNAEYIDP VSAILNGARP IQTDDFSSDR 420 DMDMLLDGTP KLPAISDVFW EQFLTTSPPS GDSDEINSSS PENGASCEPE LLLGKNNGRD 480 RIQHTNHLTE QMGLLTTDNR RG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 15 | 113 | 20 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ702446 | 0.0 | KJ702446.1 Gossypium hirsutum heat shock transcription factor (HSF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470001.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470002.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470003.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470004.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470005.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470006.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470008.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470009.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Refseq | XP_012470010.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Swissprot | O81821 | 1e-158 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A0D2QG07 | 0.0 | A0A0D2QG07_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G053300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-137 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G053300.1 |
Entrez Gene | 105787939 |
Publications ? help Back to Top | |||
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