PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G048800.1
Common NameB456_003G048800, LOC105787886
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 377aa    MW: 40871 Da    PI: 6.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G048800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21157206255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae+Aa+a+++a+++++g
  Gorai.003G048800.1 157 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRG 206
                         7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-33157215IPR001471AP2/ERF domain
SMARTSM003803.7E-37157220IPR001471AP2/ERF domain
PfamPF008472.4E-14157206IPR001471AP2/ERF domain
PROSITE profilePS5103225.515157214IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-23157215IPR016177DNA-binding domain
PRINTSPR003675.6E-12158169IPR001471AP2/ERF domain
CDDcd000185.15E-29165216No hitNo description
PRINTSPR003675.6E-12180196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MYQLMMTRED GSSSAAVAEA VPSSSLMLSD VCRDREMSVM VSALTHVVAG DVPADDEELS  60
GNEYLDWRSN NINPSLGFCG IKRGREEVNG CATGGGGVGR MAVESVANLC SQFVHLPHGG  120
SSSAVAGVTE ANTPAQLVPT YEYNSNENNN REEPRRRYRG VRQRPWGKWA AEIRDPFKAA  180
RVWLGTFDTA EDAARAYDEA ALRFRGNKAK LNFPENVKLR SVPPNQTATH FPISDSPNTH  240
FSIPTSTEPI VHHSQSHYSV PNPQVAGGYL DYSQLFLGSS TSSFPREQQL QQLRQNQPIY  300
PYDRTVLSSS VSSRAQSSSL SSSSPASPPT SYPIVFPLQA SGYQFNLGNS SQGGGIGDFS  360
VHSWSSDSSQ YPSTTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24156217163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598090.0KP259809.1 Gossypium barbadense ethylene-responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469936.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0D2NWF30.0A0A0D2NWF3_GOSRA; Uncharacterized protein
STRINGGorai.003G048800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-24ethylene response factor 110
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]