PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G047800.1
Common NameB456_003G047800, LOC105787878
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 211aa    MW: 23708.4 Da    PI: 9.2199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G047800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29123180259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYG+K++k+s++pr+YY+C+s gC+vkk++er+ +d+++v++tYeg Hnhe
  Gorai.003G047800.1 123 DDGYKWRKYGKKSIKNSPNPRNYYKCSSVGCNVKKRIERDVKDQSYVVTTYEGVHNHE 180
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31110182IPR003657WRKY domain
SuperFamilySSF1182905.62E-27115182IPR003657WRKY domain
PROSITE profilePS5081130.423117182IPR003657WRKY domain
SMARTSM007742.2E-32122181IPR003657WRKY domain
PfamPF031068.2E-23123180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHNKLPSLQN SIKDQKSRFS LKMDFSHQNP NSNPNYTFFP ENVNPMPDFE VSDYLDLDGS  60
IFDDDTSSQS MVSSEKGMAA ATELSGATSK NSNRKCKNGV GKNKSELGVR VAFRMKSEME  120
VTDDGYKWRK YGKKSIKNSP NPRNYYKCSS VGCNVKKRIE RDVKDQSYVV TTYEGVHNHE  180
TPSMVYYNQM SIMAPNAWTF QASPPSSSST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24112183778Probable WRKY transcription factor 4
2lex_A3e-24112183778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698061e-115KF669806.1 Gossypium hirsutum WRKY transcription factor 20 (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469924.11e-157PREDICTED: probable WRKY transcription factor 51
SwissprotQ93WU96e-46WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A0D2QNC61e-155A0A0D2QNC6_GOSRA; Uncharacterized protein
STRINGGorai.003G047800.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57112747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-48WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]