PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G046600.1

Common Name

B456_003G046600, LOC105787865

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YB

Protein Properties

Length: 227aa MW: 24639 Da PI: 7.4405

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G046600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.2	9.1e-57	25	120	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+kyre Gorai.003G046600.1 25 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRE 115 89*************************************************************************************** PP NF-YB 93 legek 97 +egek Gorai.003G046600.1 116 TEGEK 120 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-54	21	133	IPR009072	Histone-fold
SuperFamily	SSF47113	2.99E-41	27	132	IPR009072	Histone-fold
Pfam	PF00808	2.0E-27	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.8E-20	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	8.8E-20	77	95	No hit	No description
PRINTS	PR00615	8.8E-20	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MTGKRNQTSP VGSPSSGNIS DSSSKEQDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE 60 CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL NKYRETEGEK 120 NSMARQEDHH HHHHHQSPTS YGLISHGGAN EFNNVNAGIS SSANAADHFQ GYNSGGGGFF 180 SLGSHPQSYG ENLMAAAGGF NTSRMGENGD GNGNRTMAAH FHRVDW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-49	25	115	2	92	Transcription factor HapC (Eurofung)
4g92_B	8e-49	25	115	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393597	1e-134	GQ393597.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0562 SSR marker CGR5603 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469906.1	1e-170	PREDICTED: nuclear transcription factor Y subunit B-3-like
Refseq	XP_016742281.1	1e-170	PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A0D2NW97	1e-169	A0A0D2NW97_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NTH0	1e-169	A0A1U8NTH0_GOSHI; nuclear transcription factor Y subunit B-3-like
STRING	Gorai.003G046600.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20563	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-64	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Gorai.003G046600.1
Entrez Gene	105787865

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]