PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G037100.2 | ||||||||
Common Name | B456_003G037100, LOC105787747 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 506aa MW: 55821.7 Da PI: 6.8892 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.3e-15 | 221 | 280 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Gorai.003G037100.2 221 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 280 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 49.9 | 8e-16 | 323 | 374 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Gorai.003G037100.2 323 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 374 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.78E-23 | 221 | 290 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-17 | 221 | 289 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-12 | 221 | 280 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-16 | 222 | 288 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.44 | 222 | 288 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-29 | 222 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 223 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-11 | 323 | 384 | No hit | No description |
Pfam | PF00847 | 3.3E-10 | 323 | 374 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-18 | 323 | 384 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 324 | 383 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 324 | 382 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-31 | 324 | 388 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-6 | 364 | 384 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAPATVSNWL SFSLSPMEML RSSSEPQFVS YEGSSAATAS AASPHYLIDN FYANEWTNPK 60 HQTQQPAMAA DESSILSSFH HHQVPKLEDF LGDSSSIVRY SDNSQTETQD SSLTHLTQIY 120 DHHHVGAAAY FNDHQDLKAI TGFQAFSTNS GSEVDDSASM GRTQLAAVEF PGHSNCPTAG 180 SLSLGVNQTS EINTTTTNKA VVSVDSDCSK KIVDTFGQRT SIYRGVTRHR WTGRYEAHLW 240 DNSCRREGQA RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTATTNFPIT NYSKELEEMK 300 HVTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE 360 AAEAYDIAAI KFRGINAVTN FEMSRYDVEA IAKSSLPIGG AAKRLKISLE SEQKPAVVNH 420 EQQPQCSSNS NISFAPMQQS ISTIPCGIPF DAAAFYQHNL YHHLQASNIS ISDLPGSSST 480 MTTTPTTLMS QPTADQFFLW PHQSY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469751.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A0D2QMW2 | 0.0 | A0A0D2QMW2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G037100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G037100.2 |
Entrez Gene | 105787747 |
Publications ? help Back to Top | |||
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