PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G037100.1
Common NameB456_003G037100, LOC105787747
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 506aa    MW: 55821.7 Da    PI: 6.8892
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G037100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.3e-15221280155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Gorai.003G037100.1 221 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 280
                         57*******************666664478446*************************98 PP
2AP249.98e-16323374155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Gorai.003G037100.1 323 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 374
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.78E-23221290No hitNo description
SuperFamilySSF541711.24E-17221289IPR016177DNA-binding domain
PfamPF008476.7E-12221280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-16222288IPR001471AP2/ERF domain
PROSITE profilePS5103219.44222288IPR001471AP2/ERF domain
SMARTSM003801.3E-29222294IPR001471AP2/ERF domain
PRINTSPR003672.7E-6223234IPR001471AP2/ERF domain
CDDcd000182.06E-11323384No hitNo description
PfamPF008473.3E-10323374IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18323384IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18324383IPR001471AP2/ERF domain
PROSITE profilePS5103219.111324382IPR001471AP2/ERF domain
SMARTSM003803.8E-31324388IPR001471AP2/ERF domain
PRINTSPR003672.7E-6364384IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAPATVSNWL SFSLSPMEML RSSSEPQFVS YEGSSAATAS AASPHYLIDN FYANEWTNPK  60
HQTQQPAMAA DESSILSSFH HHQVPKLEDF LGDSSSIVRY SDNSQTETQD SSLTHLTQIY  120
DHHHVGAAAY FNDHQDLKAI TGFQAFSTNS GSEVDDSASM GRTQLAAVEF PGHSNCPTAG  180
SLSLGVNQTS EINTTTTNKA VVSVDSDCSK KIVDTFGQRT SIYRGVTRHR WTGRYEAHLW  240
DNSCRREGQA RKGRQVYLGG YDKEEKAARA YDLAALKYWG PTATTNFPIT NYSKELEEMK  300
HVTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE  360
AAEAYDIAAI KFRGINAVTN FEMSRYDVEA IAKSSLPIGG AAKRLKISLE SEQKPAVVNH  420
EQQPQCSSNS NISFAPMQQS ISTIPCGIPF DAAAFYQHNL YHHLQASNIS ISDLPGSSST  480
MTTTPTTLMS QPTADQFFLW PHQSY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469751.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0D2QMW20.0A0A0D2QMW2_GOSRA; Uncharacterized protein
STRINGGorai.003G037100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]