PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G036800.1 | ||||||||
Common Name | B456_003G036800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 301aa MW: 32873.4 Da PI: 9.5212 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.7 | 3.3e-40 | 34 | 94 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk++ Gorai.003G036800.1 34 QDQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKMK 94 6899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 29 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-33 | 35 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.432 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MMSLDNPPAK PGGGGSKEET QKGGSRKTSS TRTQDQALKC PRCDSPNTKF CYYNNYSLTQ 60 PRHFCKTCRR YWTKGGALRN VPIGGGCRKN KKMKSSSRLS SGDPKGSTSE MGGGLKFFHD 120 ISPAMDFQLG GLSFQSPATG IYNQFASFGD GNNNSSVGSP LMGFSNYPQP FPSVTTNLTG 180 AIPDMGSSLN SLSSINQDLH WKLQQQRLAT MLFDGGEQNQ AQQQKPLPIL FQNLEVSKPE 240 NVSTMENPRK SNETAKEWFF GNSYATPTTS SNGNDNNNTS NWNGVQVQPW NDLNQYTTLP 300 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469747.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A0D2NVV6 | 0.0 | A0A0D2NVV6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G036800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4950 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 8e-63 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G036800.1 |
Publications ? help Back to Top | |||
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