PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G030800.3 | ||||||||
Common Name | B456_003G030800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 23553.1 Da PI: 10.32 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.6e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+ I + R+ ++k++w++ Gorai.003G030800.3 5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.54 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.71E-16 | 2 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-14 | 4 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.81E-19 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.3E-8 | 114 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 17.311 | 115 | 206 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 2.29E-11 | 116 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.0E-11 | 120 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.3E-7 | 123 | 177 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA 60 IWGSRQKAKL ALKRNQLAAK HDDNPMALIT VPPTEEVVDP KPLAISSGTP RVTGPKKPVS 120 RLENILLEAI TSLREPGGSD RASIALYIEE KYAAPLNLKK LLATKLKLLV ANGTLTKDCT 180 TFNYFRNKIS SACFGRKAEG FFEIGEESHQ HSY* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469639.1 | 1e-126 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Refseq | XP_016706224.1 | 1e-126 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Refseq | XP_017624388.1 | 1e-126 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Swissprot | Q9FJW5 | 1e-64 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A0D2QF12 | 1e-155 | A0A0D2QF12_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G030800.1 | 1e-125 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 1e-59 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G030800.3 |
Publications ? help Back to Top | |||
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