PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G030800.2 | ||||||||
Common Name | B456_003G030800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 31498.5 Da PI: 10.5184 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.6 | 4.4e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+ I + R+ ++k++w++ Gorai.003G030800.2 5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.54 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-16 | 2 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-14 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.59E-18 | 6 | 57 | No hit | No description |
SMART | SM00526 | 4.6E-13 | 114 | 181 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 22.159 | 115 | 186 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.99E-15 | 116 | 192 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-13 | 120 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 1.1E-8 | 123 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA 60 IWGSRQKAKL ALKRNQLAAK HDDNPMALIT VPPTEEVVDP KPLAISSGTP RVTGPKKPVS 120 RLENILLEAI TSLREPGGSD RASIALYIEE KYAAPLNLKK LLATKLKLLV ANGTLTKVKH 180 KYRIAPHSTI SETRSPLLAL EGRQKDSSKS EKKAINILTK TQVDVELSKM KTMTAEEAAA 240 AAARAVAEAE FAIAEAEKAA READAAEAEA EAAKIFAKAA AKALKSRMLV T* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469639.1 | 0.0 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Refseq | XP_016706224.1 | 0.0 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Refseq | XP_017624388.1 | 0.0 | PREDICTED: telomere repeat-binding factor 2-like isoform X2 | ||||
Swissprot | Q9FJW5 | 2e-82 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A0D2NVP0 | 0.0 | A0A0D2NVP0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G030800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 5e-72 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G030800.2 |
Publications ? help Back to Top | |||
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