PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G023300.2
Common NameB456_003G023300, LOC105787607
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 170aa    MW: 19262.5 Da    PI: 4.347
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G023300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.37.1e-05981391145
                         HHHHHHHHHH.....HSSS--HHHHHHHHHHC..TS-HHHHH CS
            Homeobox  11 qleeLeelFe.....knrypsaeereeLAkkl..gLterqVk 45 
                           eeL ++F+     +n ++sa+++e++A++l  +Lt++ ++
  Gorai.003G023300.2  98 TKEELTKAFQiidqdNNGKISAQDIERIANELgvNLTKKEIQ 139
                         6799******9998789***************9999999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474733.85E-4917164IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.101.9E-3223110IPR011992EF-hand domain pair
PROSITE profilePS5022216.8572459IPR002048EF-hand domain
PfamPF134993.2E-172789IPR002048EF-hand domain
SMARTSM000543.4E-82856IPR002048EF-hand domain
CDDcd000517.29E-212890No hitNo description
PROSITE patternPS0001803749IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022215.2946095IPR002048EF-hand domain
SMARTSM000541.3E-76492IPR002048EF-hand domain
PROSITE patternPS0001807385IPR018247EF-Hand 1, calcium-binding site
PROSITE profilePS5022213.48197132IPR002048EF-hand domain
PfamPF134991.1E-15100163IPR002048EF-hand domain
SMARTSM000540.0038101129IPR002048EF-hand domain
CDDcd000516.98E-17101163No hitNo description
PROSITE patternPS000180110122IPR018247EF-Hand 1, calcium-binding site
Gene3DG3DSA:1.10.238.101.1E-22111165IPR011992EF-hand domain pair
PROSITE profilePS5022214.095133168IPR002048EF-hand domain
SMARTSM000543.9E-7137165IPR002048EF-hand domain
PROSITE patternPS000180146158IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSIYKDTPG KDKHKGRHHG LSQQKKQEIK EAFELFDTDG SGTIDAKELN VAMRALGFEM  60
TEEQIEQMIA DVDKDGSGAI DFDEFVYMMT AKIGERDTKE ELTKAFQIID QDNNGKISAQ  120
DIERIANELG VNLTKKEIQD MIEEADKDND GEVSMDEFMR MMKRTTYGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3qrx_A5e-661116713168Centrin
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a fundamental role in microtubule-organizing center structure and function.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469537.11e-120PREDICTED: caltractin-like
SwissprotP412102e-95CATR_ATRNU; Caltractin
TrEMBLA0A0D2QEM81e-118A0A0D2QEM8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SCV61e-118A0A2P5SCV6_GOSBA; Uncharacterized protein
STRINGGorai.003G023300.11e-118(Gossypium raimondii)
Publications ? help Back to Top
  1. Zhu JK,Bressan RA,Hasegawa PM
    An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene.
    Plant Physiol., 1992. 99(4): p. 1734-5
    [PMID:16669106]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]