PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G023300.1

Common Name

B456_003G023300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 171aa MW: 19390.7 Da PI: 4.4012

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G023300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.2e-05	99	140	11	45
HHHHHHHHHH.....HSSS--HHHHHHHHHHC..TS-HHHHH CS Homeobox 11 qleeLeelFe.....knrypsaeereeLAkkl..gLterqVk 45 eeL ++F+ +n ++sa+++e++A++l +Lt++ ++ Gorai.003G023300.1 99 TKEELTKAFQiidqdNNGKISAQDIERIANELgvNLTKKEIQ 140 6799****9998789*************9999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47473	3.85E-49	18	165	IPR011992	EF-hand domain pair
Gene3D	G3DSA:1.10.238.10	1.9E-32	24	111	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	16.857	25	60	IPR002048	EF-hand domain
Pfam	PF13499	3.3E-17	28	90	IPR002048	EF-hand domain
CDD	cd00051	7.86E-21	29	91	No hit	No description
SMART	SM00054	3.4E-8	29	57	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	38	50	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	15.294	61	96	IPR002048	EF-hand domain
SMART	SM00054	1.3E-7	65	93	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	74	86	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	13.481	98	133	IPR002048	EF-hand domain
Pfam	PF13499	1.1E-15	101	164	IPR002048	EF-hand domain
CDD	cd00051	7.47E-17	102	164	No hit	No description
SMART	SM00054	0.0038	102	130	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	111	123	IPR018247	EF-Hand 1, calcium-binding site
Gene3D	G3DSA:1.10.238.10	1.1E-22	112	166	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	14.095	134	169	IPR002048	EF-hand domain
SMART	SM00054	3.9E-7	138	166	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	147	159	IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MKSSIYKDTP GKDKHKGRHH GLSQQKKQEI KEAFELFDTD GSGTIDAKEL NVAMRALGFE 60 MTEEQIEQMI ADVDKDGSGA IDFDEFVYMM TAKIGERDTK EELTKAFQII DQDNNGKISA 120 QDIERIANEL GVNLTKKEIQ DMIEEADKDN DGEVSMDEFM RMMKRTTYGY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3qrx_A	6e-66	12	168	13	168	Centrin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a fundamental role in microtubule-organizing center structure and function.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016690598.1	1e-119	PREDICTED: caltractin-like
Swissprot	P41210	1e-95	CATR_ATRNU; Caltractin
TrEMBL	A0A0D2RFE9	1e-119	A0A0D2RFE9_GOSRA; Uncharacterized protein
STRING	Gorai.003G023300.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11230	2	2

Link Out ? help Back to Top
Phytozome	Gorai.003G023300.1

Publications ? help Back to Top
Zhu JK,Bressan RA,Hasegawa PM An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene. Plant Physiol., 1992. 99(4): p. 1734-5 [PMID:16669106] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]