PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G022700.1 | ||||||||
Common Name | B456_003G022700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13499.9 Da PI: 10.9229 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.8 | 1.1e-19 | 5 | 101 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k+l s + +++rl+lp k++++ + + lt++de+gr+W + +++r+++ vl++GW +Fvk + Lk gD ++Fkl+ + Gorai.003G022700.1 5 FVKIL--SKTDTEKRLSLPTKYMKHLpRIRRGHAVNLTVMDEQGRQWHFGYTIRRNGHPkPVLSAGWHDFVKGKYLKPGDQIIFKLEANdA 93 88999..77888889********6559666667899***************885554445**************************97745 PP EE..EEEE CS B3 89 efelvvkv 96 + ++++v Gorai.003G022700.1 94 AALYTIGV 101 55555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.548 | 3 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-17 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.5E-16 | 5 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.8E-11 | 5 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.11E-22 | 5 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MALQFVKILS KTDTEKRLSL PTKYMKHLPR IRRGHAVNLT VMDEQGRQWH FGYTIRRNGH 60 PKPVLSAGWH DFVKGKYLKP GDQIIFKLEA NDAAALYTIG VKRRIRLLGT EVWTAVC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472265.1 | 2e-81 | PREDICTED: B3 domain-containing transcription factor VAL3-like | ||||
TrEMBL | A0A0D2QEL4 | 3e-82 | A0A0D2QEL4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G022700.1 | 5e-83 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22071 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 4e-12 | VP1/ABI3-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G022700.1 |
Publications ? help Back to Top | |||
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