PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G021300.3 | ||||||||
Common Name | B456_003G021300, LOC105787594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 251aa MW: 28830.7 Da PI: 5.8875 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.4 | 2.4e-11 | 225 | 249 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rFvea+++LGGs+ Gorai.003G021300.3 225 KQRRCWSPELHKRFVEALQKLGGSK 249 79*********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-8 | 224 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-7 | 225 | 247 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MELNMDVDLV YVPETVSEFL KQASKIKNGF QRLCKISDYV RRLEDEMKKI DAFKRELPIC 60 MLLLKDVIKR LKEEEMMCKE LGDGSVTIDE GNGKVNKEND GGAGNKRNWL STVQLWNSDS 120 EKVDQNKKPN KVPGLKLGSE EEEEEEQDMF EDPIEFFNNR RFKGQMDKEN LELSLMTPSF 180 DLGSSSPSHN PILKINDNCK TGFGSDQNQT KFQTKHQQDM QNCKKQRRCW SPELHKRFVE 240 ALQKLGGSKG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ837700 | 0.0 | JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469518.1 | 0.0 | PREDICTED: probable transcription factor KAN3 | ||||
TrEMBL | A0A0D2QM25 | 0.0 | A0A0D2QM25_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2RFB9 | 0.0 | A0A0D2RFB9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G021300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 1e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G021300.3 |
Entrez Gene | 105787594 |
Publications ? help Back to Top | |||
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