PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G021300.2

Common Name

B456_003G021300, LOC105787594

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 276aa MW: 30729 Da PI: 6.3774

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G021300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.9e-33	150	205	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFvea+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.003G021300.2 150 KQRRCWSPELHKRFVEALQKLGGSKVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 205 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.212	147	207	IPR017930	Myb domain
SuperFamily	SSF46689	6.46E-19	148	208	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-29	149	208	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-27	150	205	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	152	203	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MMCKELGDGS VTIDEGNGKV NKENDGGAGN KRNWLSTVQL WNSDSEKVDQ NKKPNKVPGL 60 KLGSEEEEEE EQDMFEDPIE FFNNRRFKGQ MDKENLELSL MTPSFDLGSS SPSHNPILKI 120 NDNCKTGFGS DQNQTKFQTK HQQDMQNCKK QRRCWSPELH KRFVEALQKL GGSKVATPKQ 180 IRELMQVDGL TNDEVKSHLQ KYRLHFRKVA SDSSAQNQCN EKMKANISES DSPQGPLRAG 240 GWAKGLSSGG SVVEGEDDEK SDGRSWRSGG TKTGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	150	203	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	150	203	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	150	203	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	150	203	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ837700	0.0	JQ837700.1 Gossypium hirsutum cultivar ZM3 MYB mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469518.1	0.0	PREDICTED: probable transcription factor KAN3
TrEMBL	A0A0D2MI74	0.0	A0A0D2MI74_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2RFB9	0.0	A0A0D2RFB9_GOSRA; Uncharacterized protein
STRING	Gorai.003G021300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	2e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G021300.2
Entrez Gene	105787594

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]