PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020800.1
Common NameB456_003G020800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 313aa    MW: 35770.6 Da    PI: 9.2928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-1723113299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk+    d+ ++g l +pkkf+++hg+   +    ++  +sg++W+v+l  +k++g+++ ++GW eF +   L  g  +vF++dg+s+f  
  Gorai.003G020800.1  23 FKII-LQDNIQNGKLGIPKKFVKNHGNGMSS--PAMFSVPSGEVWKVEL--TKCDGKIWCENGWLEFSNHYSLYIGHLLVFRYDGNSNF-- 106
                         5544.479999999***********766545..5999************..**********************************9999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f++
  Gorai.003G020800.1 107 HVIIFDR 113
                         9999997 PP
2B353.64.1e-17236309983
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                         + +k+ rl +p +f++e+ +k+++s  +tl ++sg++W v+++  +++g+    +l++GW  Fv++n++++gD++ F+
  Gorai.003G020800.1 236 SLGKRYRLAIPADFVRENLMKEHCS--ITLCHSSGKTWMVTFK--QQKGQklySFLQTGWVTFVRDNNIQVGDVCAFE 309
                         5578899***********8888886..9999***********4..4444446789**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-2317114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-2318113IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-1720112No hitNo description
PROSITE profilePS5086312.44921114IPR003340B3 DNA binding domain
SMARTSM010193.8E-1622114IPR003340B3 DNA binding domain
PfamPF023628.3E-1423113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21216309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20217309IPR015300DNA-binding pseudobarrel domain
CDDcd100178.69E-17222309No hitNo description
SMARTSM010190.0015223311IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62228312IPR003340B3 DNA binding domain
PfamPF023622.3E-14236309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAASSHQQGN GHLKYISDSP YFFKIILQDN IQNGKLGIPK KFVKNHGNGM SSPAMFSVPS  60
GEVWKVELTK CDGKIWCENG WLEFSNHYSL YIGHLLVFRY DGNSNFHVII FDRTATEIQY  120
PYTSNYHRQS NVILEQNIDQ SRKPGEESQL PRPRPRPQSH KMVRSTKSAM ETETEAECNG  180
KPDFPARNGD TSTNHNTVRR LNTCEKVKAL ERARNTFKSE NPFFLVVIQP DYVGLSLGKR  240
YRLAIPADFV RENLMKEHCS ITLCHSSGKT WMVTFKQQKG QKLYSFLQTG WVTFVRDNNI  300
QVGDVCAFEA FL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5871792e-47JX587179.1 Gossypium hirsutum clone NBRI_GE21198 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472263.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2QM030.0A0A0D2QM03_GOSRA; Uncharacterized protein
STRINGGorai.003G020800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-37B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]