PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020700.2
Common NameB456_003G020700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 335aa    MW: 37999.2 Da    PI: 10.6962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-171196192
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                        ffk+l    ++ ++  ++p  f++ + +g+   +++ltl++ sg+sW+v++  +  +g+y++ +GW++Fvk  +L+ gDf+vF l+++s+f  
  Gorai.003G020700.2 11 FFKIL--IGNFDKK-QRIPPAFVKYIfKGN--VPTMLTLYSDSGNSWRVRI--KVEQGSYFFNNGWSKFVKYRDLEIGDFLVFFLVDSSTFDV 96
                        55666..3334443.579*****5558444..4668***************..999999*************************998888744 PP

2B332.91.1e-101762521798
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +p+ f+ee g+ k +  +++++ +s   W +    + +s++++l+ GW++F ++n++  gD+++F+++ +++   +v+v++
  Gorai.003G020700.2 176 GIPRCFTEEAGLGKVS--MVMIKGPS-GMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEYVPNTGHLIHVQVVN 252
                         59999**999888655..45555555.57*****..999999**************************98777767887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-226104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-227104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.0438102IPR003340B3 DNA binding domain
CDDcd100171.72E-209100No hitNo description
PfamPF023621.9E-151197IPR003340B3 DNA binding domain
SMARTSM010191.2E-1411102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-11153254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-13158252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.32160254IPR003340B3 DNA binding domain
SMARTSM010191.4E-4163254IPR003340B3 DNA binding domain
PfamPF023625.9E-8176250IPR003340B3 DNA binding domain
CDDcd100171.87E-8177250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTRKPKRNPS FFKILIGNFD KKQRIPPAFV KYIFKGNVPT MLTLYSDSGN SWRVRIKVEQ  60
GSYFFNNGWS KFVKYRDLEI GDFLVFFLVD SSTFDVFIYN RTACAKIIIL AAKKQKGRSP  120
RVSRQIEQTP SHKCTSTSKK PRTVPRAQEV EFVSGVTPKS VSYVMVVKGY NKYYAGIPRC  180
FTEEAGLGKV SMVMIKGPSG MWPMMTTFSS KQVLLSVGWS KFLHENEIVI GDTLLFEYVP  240
NTGHLIHVQV VNKDGTGNCG SLAGKRPRDR PREQTELPPS TKYASSYKRT KGVSELILEQ  300
ASFVVVLKKY HQYSVSVPAS FLPKKQAWQR NRAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469512.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A0D2NV220.0A0A0D2NV22_GOSRA; Uncharacterized protein
STRINGGorai.003G020700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.15e-14B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]