PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G020700.2 | ||||||||
Common Name | B456_003G020700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 37999.2 Da PI: 10.6962 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54 | 3e-17 | 11 | 96 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffk+l ++ ++ ++p f++ + +g+ +++ltl++ sg+sW+v++ + +g+y++ +GW++Fvk +L+ gDf+vF l+++s+f Gorai.003G020700.2 11 FFKIL--IGNFDKK-QRIPPAFVKYIfKGN--VPTMLTLYSDSGNSWRVRI--KVEQGSYFFNNGWSKFVKYRDLEIGDFLVFFLVDSSTFDV 96 55666..3334443.579*****5558444..4668***************..999999*************************998888744 PP | |||||||
2 | B3 | 32.9 | 1.1e-10 | 176 | 252 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p+ f+ee g+ k + +++++ +s W + + +s++++l+ GW++F ++n++ gD+++F+++ +++ +v+v++ Gorai.003G020700.2 176 GIPRCFTEEAGLGKVS--MVMIKGPS-GMWPMMT--TFSSKQVLLSVGWSKFLHENEIVIGDTLLFEYVPNTGHLIHVQVVN 252 59999**999888655..45555555.57*****..999999**************************98777767887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-22 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-22 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.043 | 8 | 102 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.72E-20 | 9 | 100 | No hit | No description |
Pfam | PF02362 | 1.9E-15 | 11 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-14 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-11 | 153 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-13 | 158 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.32 | 160 | 254 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-4 | 163 | 254 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.9E-8 | 176 | 250 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.87E-8 | 177 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MTRKPKRNPS FFKILIGNFD KKQRIPPAFV KYIFKGNVPT MLTLYSDSGN SWRVRIKVEQ 60 GSYFFNNGWS KFVKYRDLEI GDFLVFFLVD SSTFDVFIYN RTACAKIIIL AAKKQKGRSP 120 RVSRQIEQTP SHKCTSTSKK PRTVPRAQEV EFVSGVTPKS VSYVMVVKGY NKYYAGIPRC 180 FTEEAGLGKV SMVMIKGPSG MWPMMTTFSS KQVLLSVGWS KFLHENEIVI GDTLLFEYVP 240 NTGHLIHVQV VNKDGTGNCG SLAGKRPRDR PREQTELPPS TKYASSYKRT KGVSELILEQ 300 ASFVVVLKKY HQYSVSVPAS FLPKKQAWQR NRAR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469512.1 | 0.0 | PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X3 | ||||
TrEMBL | A0A0D2NV22 | 0.0 | A0A0D2NV22_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 5e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G020700.2 |
Publications ? help Back to Top | |||
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