PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020600.1
Common NameB456_003G020600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 438aa    MW: 49599.4 Da    PI: 10.8392
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.9e-1822961292
                        HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                        k   l +p  f+ ++  +   + +++ +l++ sg+sW+v++  + ++g+y++ +GW++Fvk +gL+ gDf+vF l+++s+f  
  Gorai.003G020600.1 22 K---LKIPPAFL-KYvlK--GKVPTMFSLYSDSGNSWRVRV--EVQQGSYFFNSGWSKFVKYHGLEIGDFLVFFLVDSSTFDV 96
                        3...67******.77463..335779***************..*******************************998788744 PP
2B343.94.2e-141792571698
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + +p+ fa+e g+ ke s+t++ + ++g  W ++   + +++++ l++GW++F ++n++ +gD+++F+++ + +   +v++++
  Gorai.003G020600.1 179 VFIPRYFAKETGLGKE-SITII-KGPRGGMWPMNT--TESGRQVRLGGGWSQFLHENDIVVGDTLLFQHIPNASNLVHVQILN 257
                         68*********98874.55555.99**********..*******************************998855547887776 PP
3B349.38.9e-163474261699
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + +p + a+e+g+ ke s   +++d++gr+W++++    + +++ l++GW++F ++n+L++gD+++F+++ +++   +++++rk
  Gorai.003G020600.1 347 IPVPTSVAKEMGLTKEPS--TVIKDSKGRKWRLNI--LVYARSVHLGAGWSKFMEENKLEVGDTLLFQHIPNTGNVIYFHIIRK 426
                         446777899999987654..7779***********..9999999**************************88888889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-216104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.0858102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.07E-209100No hitNo description
SMARTSM010195.0E-1411102IPR003340B3 DNA binding domain
PfamPF023622.2E-152297IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17162253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-16162257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.998164259IPR003340B3 DNA binding domain
CDDcd100171.28E-12166257No hitNo description
SMARTSM010198.1E-8167259IPR003340B3 DNA binding domain
PfamPF023622.6E-11179257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-17327425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-17329426IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112332427IPR003340B3 DNA binding domain
CDDcd100177.72E-12334425No hitNo description
SMARTSM010197.6E-6335427IPR003340B3 DNA binding domain
PfamPF023621.9E-13347426IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MTRKPKRSPS FFKILVGDFV TKLKIPPAFL KYVLKGKVPT MFSLYSDSGN SWRVRVEVQQ  60
GSYFFNSGWS KFVKYHGLEI GDFLVFFLVD SSTFDVFIYN RTACAKNIIL AAKKPKGRPP  120
GGNRQIEQTP SQKCTSASKK PRAVSRARNV SQEVEFIKEE TPKHVSFVLV VKKYLKYYVF  180
IPRYFAKETG LGKESITIIK GPRGGMWPMN TTESGRQVRL GGGWSQFLHE NDIVVGDTLL  240
FQHIPNASNL VHVQILNKAG YRNHGRGGRR GRQNKQANAS EKNTIIAIKQ KRGPPCRQIE  300
EPNSKITKGL SIGGERDITR KDEFESELTP KKASFVVVLK QYQKFYIPVP TSVAKEMGLT  360
KEPSTVIKDS KGRKWRLNIL VYARSVHLGA GWSKFMEENK LEVGDTLLFQ HIPNTGNVIY  420
FHIIRKARDG NHGKRKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472261.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A0D2QEJ40.0A0A0D2QEJ4_GOSRA; Uncharacterized protein
STRINGGorai.003G020600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-16B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]