PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G020500.1 | ||||||||
Common Name | B456_003G020500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 22800.8 Da PI: 10.3692 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 22 | 106 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fk+ d+ ++g l +p+kf+++hg++ + +++ + W+v+l +k++g++++++GW eF + L+ g +vF++dg+s+f Gorai.003G020500.1 22 FKII-LQDTIQNGKLGIPRKFVRNHGNS--------MSSQQAQAWKVEL--TKCGGKIWFENGWLEFSNHYSLELGHLLVFRYDGNSNF-- 99 5544.468899999********999854........779**********..**********************************9999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f++ Gorai.003G020500.1 100 HVIIFDR 106 9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 16 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-20 | 17 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-18 | 19 | 105 | No hit | No description |
PROSITE profile | PS50863 | 11.35 | 20 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-12 | 21 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-12 | 22 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MAASHQQGND HLKFISNSPC FFKIILQDTI QNGKLGIPRK FVRNHGNSMS SQQAQAWKVE 60 LTKCGGKIWF ENGWLEFSNH YSLELGHLLV FRYDGNSNFH VIIFDRTASE IQYPYTSNNQ 120 KQSNEIPKQN INESKTECNG KSGFLAQQVS HNGCPAVKGD KRTNHPVIQR MKGREKVKAL 180 EKAINTFKSK NPFFPGSRSK G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472260.1 | 1e-106 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2NV54 | 1e-148 | A0A0D2NV54_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020500.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G020500.1 |
Publications ? help Back to Top | |||
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