PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020400.1
Common NameB456_003G020400, LOC105787588
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 433aa    MW: 48703.6 Da    PI: 10.7406
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.8e-191197195
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        ffkvl     + ++ l++p  f+ ++  +   + +++ tl++ sg+sW+v++     +g+y++ +GW++Fvk ++L+ gDf+vF l+++s+f 
  Gorai.003G020400.1 11 FFKVL--IGDFDNK-LRIPPAFV-KYvlK--GNVPTMFTLYSDSGNSWRVRV--MVEQGSYFFNSGWSKFVKHHDLEIGDFLVFFLVDTSTF- 94
                        56666..5555555.9*******.77463..446779***************..999999*************************9998888. PP

                        .EEE CS
                  B3 92 lvvk 95
                          v 
  Gorai.003G020400.1 95 -DVL 97
                        .444 PP
2B3407.2e-131802571798
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++p+ fa+e g+ ke+ +tl+ + ++g  W ++   + +++++ l++GW++F ++n++ +gD+++F+++ +++   +v++++
  Gorai.003G020400.1 180 CVPRCFAKETGLLKES-ITLI-KGPRGGMWPMNT--TECGKQVRLGGGWSRFLHENEIVVGDTLLFEHIPSKGNLVHVQIVN 257
                         689*******998754.4443.67**********..*******************************997666656777665 PP
3B3491.1e-153414121690
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          v+p +fa+e+g+ + ++   ++++++gr+W ++ i++ ks ++ l++GW++Fv++n+L+ gD+++F+++ +++ 
  Gorai.003G020400.1 341 AVVPTSFAKEMGLAE-KP-STIIKNSKGRKWLLNTIVDAKS-QVRLGAGWSQFVQENKLELGDTLLFQHIPNTGN 412
                         599********9885.44.46669***********998887.689***********************9865444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-226102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.3818102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-238104IPR015300DNA-binding pseudobarrel domain
CDDcd100173.55E-239100No hitNo description
PfamPF023622.5E-161195IPR003340B3 DNA binding domain
SMARTSM010194.4E-1811102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15161258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-17161253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.039164259IPR003340B3 DNA binding domain
CDDcd100172.15E-12166255No hitNo description
SMARTSM010191.3E-6167259IPR003340B3 DNA binding domain
PfamPF023626.0E-10180254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-18321421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-16323418IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.633326422IPR003340B3 DNA binding domain
CDDcd100178.45E-12328412No hitNo description
SMARTSM010196.5E-5329422IPR003340B3 DNA binding domain
PfamPF023625.3E-13341412IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MTRKPKRSPS FFKVLIGDFD NKLRIPPAFV KYVLKGNVPT MFTLYSDSGN SWRVRVMVEQ  60
GSYFFNSGWS KFVKHHDLEI GDFLVFFLVD TSTFDVLIYN GTACAKNIIL AAKKRKCLPP  120
LANRQIEETP SQKCASVSKK PRAVYRARSV SQEVESITEV TRKHVSFVMV VKKYHKYFAC  180
VPRCFAKETG LLKESITLIK GPRGGMWPMN TTECGKQVRL GGGWSRFLHE NEIVVGDTLL  240
FEHIPSKGNL VHVQIVNKDR YRNRGRRNKQ ADASVKNTSP AAKRPRVRPG KQIEEPPSTK  300
HAPSSKRTKG VSIGNDEIVS ELTPKKASFV MVLKEYQKYS AVVPTSFAKE MGLAEKPSTI  360
IKNSKGRKWL LNTIVDAKSQ VRLGAGWSQF VQENKLELGD TLLFQHIPNT GNVINLTIIC  420
KVGDGNNRKR NK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469509.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D2MI640.0A0A0D2MI64_GOSRA; Uncharacterized protein
STRINGGorai.003G020400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14995620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-16B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]