PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G020100.1 | ||||||||
Common Name | B456_003G020100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 247aa MW: 27520.9 Da PI: 8.8333 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.6 | 4.7e-18 | 142 | 237 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 f+ vl ps+v+ ++ l++p +fa+++ + +k+++ ++g+sW v + + + ++ ++l +GW +F+ +n+L++gD++vF+l+g Gorai.003G020100.1 142 FVIVLQPSHVHGNK-LSVPMNFARKYltmM-----HKKVIHLLSDGNSWPVIY--DPRFEWsyVFLCNGWHRFAVDNNLEVGDVCVFELTG 224 55666677777766.***********7532.....235666667*********..999999989999***********************9 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 e++++v++++k Gorai.003G020100.1 225 GIETSMKVTIYKK 237 9777799999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.038 | 1 | 83 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.22E-11 | 1 | 80 | No hit | No description |
SuperFamily | SSF101936 | 2.94E-11 | 1 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-11 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-25 | 134 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-25 | 135 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.51E-25 | 140 | 236 | No hit | No description |
SMART | SM01019 | 2.1E-12 | 141 | 238 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 141 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-17 | 142 | 237 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPCNFVKENL MKKHCSVILC NSSGKTWIAT FKQRKIGKKL TSYLIAGCGT FARDNNIQVG 60 DVCASELINS IHISFKVVIY QGQHANCHQS LAVTDVFHLV KRKAPSCAPS YASQGCPEPL 120 TALEKAKAFQ TAGAFKSENP FFVIVLQPSH VHGNKLSVPM NFARKYLTMM HKKVIHLLSD 180 GNSWPVIYDP RFEWSYVFLC NGWHRFAVDN NLEVGDVCVF ELTGGIETSM KVTIYKKQAI 240 EDENLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-15 | 120 | 236 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-15 | 120 | 236 | 27 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584907 | 9e-83 | JX584907.1 Gossypium hirsutum clone NBRI_GE18328 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638182.1 | 1e-160 | PREDICTED: B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A0D2QEJ1 | 0.0 | A0A0D2QEJ1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM36331 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G020100.1 |
Publications ? help Back to Top | |||
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