PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G020000.2
Common NameB456_003G020000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 432aa    MW: 49216 Da    PI: 9.5823
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G020000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1623113299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         fk+    d+ ++g l +p+kf+++ g++  +    +l  +sg++W+v+l  +k+ g++++++GW eF +   L+ g  +vF++dg+s+f  
  Gorai.003G020000.2  23 FKII-LQDTIQNGKLGVPRKFVKNQGNSMSS--PAMLSVPSGEVWKVEL--TKCNGKIWFENGWLEFSNHYSLDFGHLLVFRYDGNSNF-- 106
                         4544.468899999********666655444..69999***********..**********************************9999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f++
  Gorai.003G020000.2 107 HVVIFDR 113
                         **99997 PP
2B357.13.3e-18240329287
                         EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         + v+ ps+v+ s     rl +p +f+++h +k+ +s  +tl ++sg++W v+++     kk+ +y+lt GW  Fv++n++++gD + F+l+
  Gorai.003G020000.2 240 LVVMQPSYVGLShskgYRLAIPANFVRKHLMKELCS--ITLCNSSGKTWIVTFKNnqiGKKQTSYLLT-GWGTFVHDNNVRVGDACAFELI 327
                         5566666666554555899**********8887786..9999***********776645555557777.********************99 PP

                         SS CS
                  B3  86 gr 87 
                         ++
  Gorai.003G020000.2 328 NS 329
                         75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2217114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-2218113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-1720112No hitNo description
PROSITE profilePS5086313.28121114IPR003340B3 DNA binding domain
SMARTSM010194.2E-1722114IPR003340B3 DNA binding domain
PfamPF023621.4E-1323113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-23231339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-23234341IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-20237339No hitNo description
SMARTSM010192.7E-14239342IPR003340B3 DNA binding domain
PROSITE profilePS5086313.507243342IPR003340B3 DNA binding domain
PfamPF023621.8E-15251331IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MASSSYRQGN DHLKFISNSP HFFKIILQDT IQNGKLGVPR KFVKNQGNSM SSPAMLSVPS  60
GEVWKVELTK CNGKIWFENG WLEFSNHYSL DFGHLLVFRY DGNSNFHVVI FDRTATEILY  120
PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE  180
IECDGKSEFL AQQIRYEGCP ARNGDKSTRH RVIQQLKPHE KDDALERASK TFKSENPFFL  240
VVMQPSYVGL SHSKGYRLAI PANFVRKHLM KELCSITLCN SSGKTWIVTF KNNQIGKKQT  300
SYLLTGWGTF VHDNNVRVGD ACAFELINSI EISFNVVIYQ GPHTKCYQSL SSTDIIRPMK  360
RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMV SVSVETCHPF  420
QSSYYSTMRM I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469504.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_016692312.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2NV500.0A0A0D2NV50_GOSRA; Uncharacterized protein
STRINGGorai.003G020000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-41B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]