PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G011400.2

Common Name

B456_003G011400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 1125aa MW: 124242 Da PI: 4.9643

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G011400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	1101	1124	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+C++G++C++ H+ Gorai.003G011400.2 1101 GQRVCK-FYESGYCNRGASCSYWHP 1124 6799.8899*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51360	26.595	192	325	IPR004343	Plus-3 domain
SMART	SM00719	5.5E-45	192	301	IPR004343	Plus-3 domain
SuperFamily	SSF159042	2.75E-31	193	322	IPR004343	Plus-3 domain
Pfam	PF03126	2.8E-22	197	298	IPR004343	Plus-3 domain
SuperFamily	SSF55277	6.93E-16	409	465	IPR003169	GYF domain
CDD	cd00072	2.37E-16	412	469	No hit	No description
PROSITE profile	PS50829	14.479	412	466	IPR003169	GYF domain
SMART	SM00444	1.1E-18	413	468	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	1.2E-17	414	465	IPR003169	GYF domain
Pfam	PF02213	6.9E-12	414	458	IPR003169	GYF domain
PROSITE profile	PS50103	14.22	1099	1124	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.45E-6	1099	1123	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-4	1101	1124	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1125 aa Download sequence Send to blast
MCYTCTYSLC KNCTKGADYV NVRGNKGFCG LCLRTIMLIE NSTSGNKEMV QVDFDDKTSW 60 EYLFKMYWVF LKEKLSLTLD ELTKAKNPWK ENAIMEKPFG DLGASFSKRR KMLKQQAFFN 120 KVESVEAEKP GIAKNHLRPT DIISKRSEAV ATQMAVLGNS DGPPIIAIDT RCKTHEKVDE 180 KGQKANPDEF AAIDVHNMNL IYLRRSLMEN LIDDVEKFND KVVGSFVRIR IPCDQKQDIY 240 RLVQVVGTIK AAEPYKIGEK TIDVMIEILN LDKKEVVSIN GISNQELSED ECQQLRQSII 300 KSGQIKWFTV GEILEKAMAL QAVRVNDCLD SEILRVKNLC NQASKKGDTK DLRECEEKLQ 360 LLNSPDERHR RLHEIPDIHR DPNRNLFSDE ASGELDEKKK GMELSVNSIE ADKIWHYQDP 420 LGKIQGPFAM AMLRGWSSSG HFPPELRVWR VSEKQENSIL LTDALVGQYS QLQQLVQHSR 480 MPTEDASMAT EDGCRNRDED ARESKDQKVN QMESKHPEGS LNLMQNDTSG HCQNNDSAKS 540 KELGSQSSTC TAPVDIVSSN VAETGNSVPH WDSMKGDNYF PGQPQLSSSL PASTISEKPC 600 ETQSDQVSKG HGVERWDCGS IDMNLNLNKT SEGQIIDGNV KQDDNDGKSV KPSGQCWRAP 660 PLNDGSNGWN SNSGLLYLAR ALEVSELNQD IDFPDIPTST SKLNHEDSKG QDTKNKQSLS 720 SNVPQLDSGP TWSTASSLVG NGPQLPEVAG EWGGYSSNST RPSPGEWNPD LVPKSSIKPT 780 DLGSDHAATP TSGSGQLTHS SPTDPPNNES GWDSIVPEPN EYSLGDESVS DLLAEVEAME 840 SLNGLASPTS ILRCDGDLAQ GSEPDCFSPV GGLSPAPDPG KSDALSSTND LQMPSLAALT 900 NELFGISTSE VLDAQKSSGG HSSTSAEMDE DTRPSDVSVN QFEARSDMQP PAQPVTTWGM 960 TTVGSPWRPG PETTGTNWGG VHGNTSFHWD DLGQETTNLS WGTGHGTIQE NRSSIHSGTS 1020 ATNPAYFGNQ QRYVDTRDQQ RYVDPRDQQR YVDPRDQQRY VDTRDRDFHS RGRSSWNRHS 1080 SYGGGGPPPN RVGSFRPPPK GQRVCKFYES GYCNRGASCS YWHP*

Sequence ? help Back to Top

Protein Sequence Length: 1125 aa Download sequence Send to blast

MCYTCTYSLC KNCTKGADYV NVRGNKGFCG LCLRTIMLIE NSTSGNKEMV QVDFDDKTSW  60
EYLFKMYWVF LKEKLSLTLD ELTKAKNPWK ENAIMEKPFG DLGASFSKRR KMLKQQAFFN  120
KVESVEAEKP GIAKNHLRPT DIISKRSEAV ATQMAVLGNS DGPPIIAIDT RCKTHEKVDE  180
KGQKANPDEF AAIDVHNMNL IYLRRSLMEN LIDDVEKFND KVVGSFVRIR IPCDQKQDIY  240
RLVQVVGTIK AAEPYKIGEK TIDVMIEILN LDKKEVVSIN GISNQELSED ECQQLRQSII  300
KSGQIKWFTV GEILEKAMAL QAVRVNDCLD SEILRVKNLC NQASKKGDTK DLRECEEKLQ  360
LLNSPDERHR RLHEIPDIHR DPNRNLFSDE ASGELDEKKK GMELSVNSIE ADKIWHYQDP  420
LGKIQGPFAM AMLRGWSSSG HFPPELRVWR VSEKQENSIL LTDALVGQYS QLQQLVQHSR  480
MPTEDASMAT EDGCRNRDED ARESKDQKVN QMESKHPEGS LNLMQNDTSG HCQNNDSAKS  540
KELGSQSSTC TAPVDIVSSN VAETGNSVPH WDSMKGDNYF PGQPQLSSSL PASTISEKPC  600
ETQSDQVSKG HGVERWDCGS IDMNLNLNKT SEGQIIDGNV KQDDNDGKSV KPSGQCWRAP  660
PLNDGSNGWN SNSGLLYLAR ALEVSELNQD IDFPDIPTST SKLNHEDSKG QDTKNKQSLS  720
SNVPQLDSGP TWSTASSLVG NGPQLPEVAG EWGGYSSNST RPSPGEWNPD LVPKSSIKPT  780
DLGSDHAATP TSGSGQLTHS SPTDPPNNES GWDSIVPEPN EYSLGDESVS DLLAEVEAME  840
SLNGLASPTS ILRCDGDLAQ GSEPDCFSPV GGLSPAPDPG KSDALSSTND LQMPSLAALT  900
NELFGISTSE VLDAQKSSGG HSSTSAEMDE DTRPSDVSVN QFEARSDMQP PAQPVTTWGM  960
TTVGSPWRPG PETTGTNWGG VHGNTSFHWD DLGQETTNLS WGTGHGTIQE NRSSIHSGTS  1020
ATNPAYFGNQ QRYVDTRDQQ RYVDPRDQQR YVDPRDQQRY VDTRDRDFHS RGRSSWNRHS  1080
SYGGGGPPPN RVGSFRPPPK GQRVCKFYES GYCNRGASCS YWHP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576950	4e-45	JX576950.1 Gossypium hirsutum clone NBRI_GE8679 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469368.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBL	A0A0D2NUQ6	0.0	A0A0D2NUQ6_GOSRA; Uncharacterized protein
STRING	Gorai.003G011400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	1e-106	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding

Link Out ? help Back to Top
Phytozome	Gorai.003G011400.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]