PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G011400.1
Common NameB456_003G011400, LOC105787496
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1292aa    MW: 142476 Da    PI: 5.3454
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G011400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-0612681291226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          +++ C+ f+++G+C++G++C++ H+
  Gorai.003G011400.1 1268 GQRVCK-FYESGYCNRGASCSYWHP 1291
                          6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.5E-8105164IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.1E-7107163IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.618109175IPR019787Zinc finger, PHD-finger
CDDcd155681.77E-18111156No hitNo description
SMARTSM002496.3E-7111157IPR001965Zinc finger, PHD-type
PROSITE patternPS013590112172IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5136026.595359492IPR004343Plus-3 domain
SMARTSM007195.5E-45359468IPR004343Plus-3 domain
SuperFamilySSF1590423.27E-31360489IPR004343Plus-3 domain
PfamPF031263.3E-22364465IPR004343Plus-3 domain
SuperFamilySSF552778.24E-16576632IPR003169GYF domain
PROSITE profilePS5082914.479579633IPR003169GYF domain
CDDcd000721.65E-16579636No hitNo description
SMARTSM004441.1E-18580635IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-17581632IPR003169GYF domain
PfamPF022138.2E-12581625IPR003169GYF domain
SuperFamilySSF902294.08E-612661290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2212661291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1292 aa     Download sequence    Send to blast
MENCQQVESG TALCKRGGGG DAENNSDGLN RGVELMNVDH CRKVPLTEDS NLVDVAVRGD  60
GGGMGEVKLG NGVKVVEMKR RRGRPPKNPA RNMSSSAPAP VTVRKKDEED VCFICFDGGS  120
LVLCDRHGCP KAYHPACIKR DEAFFRSKAK WNCGWHICST CQKSSYYMCY TCTYSLCKNC  180
TKGADYVNVR GNKGFCGLCL RTIMLIENST SGNKEMVQVD FDDKTSWEYL FKMYWVFLKE  240
KLSLTLDELT KAKNPWKENA IMEKPFGDLG ASFSKRRKML KQQAFFNKVE SVEAEKPGIA  300
KNHLRPTDII SKRSEAVATQ MAVLGNSDGP PIIAIDTRCK THEKVDEKGQ KANPDEFAAI  360
DVHNMNLIYL RRSLMENLID DVEKFNDKVV GSFVRIRIPC DQKQDIYRLV QVVGTIKAAE  420
PYKIGEKTID VMIEILNLDK KEVVSINGIS NQELSEDECQ QLRQSIIKSG QIKWFTVGEI  480
LEKAMALQAV RVNDCLDSEI LRVKNLCNQA SKKGDTKDLR ECEEKLQLLN SPDERHRRLH  540
EIPDIHRDPN RNLFSDEASG ELDEKKKGME LSVNSIEADK IWHYQDPLGK IQGPFAMAML  600
RGWSSSGHFP PELRVWRVSE KQENSILLTD ALVGQYSQLQ QLVQHSRMPT EDASMATEDG  660
CRNRDEDARE SKDQKVNQME SKHPEGSLNL MQNDTSGHCQ NNDSAKSKEL GSQSSTCTAP  720
VDIVSSNVAE TGNSVPHWDS MKGDNYFPGQ PQLSSSLPAS TISEKPCETQ SDQVSKGHGV  780
ERWDCGSIDM NLNLNKTSEG QIIDGNVKQD DNDGKSVKPS GQCWRAPPLN DGSNGWNSNS  840
GLLYLARALE VSELNQDIDF PDIPTSTSKL NHEDSKGQDT KNKQSLSSNV PQLDSGPTWS  900
TASSLVGNGP QLPEVAGEWG GYSSNSTRPS PGEWNPDLVP KSSIKPTDLG SDHAATPTSG  960
SGQLTHSSPT DPPNNESGWD SIVPEPNEYS LGDESVSDLL AEVEAMESLN GLASPTSILR  1020
CDGDLAQGSE PDCFSPVGGL SPAPDPGKSD ALSSTNDLQM PSLAALTNEL FGISTSEVLD  1080
AQKSSGGHSS TSAEMDEDTR PSDVSVNQFE ARSDMQPPAQ PVTTWGMTTV GSPWRPGPET  1140
TGTNWGGVHG NTSFHWDDLG QETTNLSWGT GHGTIQENRS SIHSGTSATN PAYFGNQQRY  1200
VDTRDQQRYV DPRDQQRYVD PRDQQRYVDT RDRDFHSRGR SSWNRHSSYG GGGPPPNRVG  1260
SFRPPPKGQR VCKFYESGYC NRGASCSYWH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-13102184887Histone-lysine N-methyltransferase NSD3
4gnd_C1e-13102184887Histone-lysine N-methyltransferase NSD3
4gne_A1e-13102184887Histone-lysine N-methyltransferase NSD3
4gnf_A1e-13102184887Histone-lysine N-methyltransferase NSD3
4gng_A1e-13102184887Histone-lysine N-methyltransferase NSD3
4gng_D1e-13102184887Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144476e-94JX614447.1 Gossypium hirsutum clone NBRI_GE57824 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469368.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A0D2MHS30.0A0A0D2MHS3_GOSRA; Uncharacterized protein
STRINGGorai.003G011400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1764523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-105DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]