PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G011200.6 | ||||||||
Common Name | B456_003G011200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 127aa MW: 13932.4 Da PI: 8.1659 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.5e-08 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++ fC ++ lC++C ++ H Gorai.003G011200.6 4 LCDACESAPAIVFCAADEAALCHSCDEKVH 33 6**************************998 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 53 | 91 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H Gorai.003G011200.6 53 VPRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGgkktH 91 689*************************99996555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.21 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.16E-5 | 3 | 45 | No hit | No description |
SMART | SM00336 | 1.4E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.5E-6 | 4 | 42 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.56 | 51 | 103 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-7 | 53 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.39E-5 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MRILCDACES APAIVFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLANP SAVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD VIVHVGGKKT HGRYLLLRQR VEVLVLCSFR VIRRLNRVKT 120 GEAKIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692437.1 | 3e-85 | PREDICTED: B-box zinc finger protein 19-like isoform X3 | ||||
Swissprot | C0SVM5 | 3e-61 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0D2RET8 | 4e-86 | A0A0D2RET8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G011200.1 | 5e-68 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-56 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G011200.6 |
Publications ? help Back to Top | |||
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