PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G007000.1 | ||||||||
Common Name | B456_003G007000, LOC105787448 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 228aa MW: 25091 Da PI: 10.7221 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.3e-14 | 158 | 207 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +L+ + e+l+ Gorai.003G007000.1 158 RRHKRMIKNRESAARSRARKQAYTNELELEVAHLMEENAKLRRQQEQLRV 207 699***************************************99999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.4E-11 | 149 | 218 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.3 | 156 | 206 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-12 | 158 | 206 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 6.81E-30 | 158 | 212 | No hit | No description |
SuperFamily | SSF57959 | 4.19E-11 | 158 | 206 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-14 | 158 | 207 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 161 | 176 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLSPSNKPQI TPLKPSSPSP PHRPKTMEEV WNDITLASLH DHHSSSSSSR EPFSSSPHLI 60 LQDFLAARSD PPPPQQQTNG GGDTNTMLYG SPLPPPATVL SLNSGPGFDF LDNPRLQSSP 120 ISTLPTFNSP FEALASSTTL ATFGKKRTQD SDNSSGNRRH KRMIKNRESA ARSRARKQAY 180 TNELELEVAH LMEENAKLRR QQEQLRVAAT AQLSRNRMLQ RTSTAPF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615437 | 1e-179 | JX615437.1 Gossypium hirsutum clone NBRI_GE59423 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469288.1 | 1e-164 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 2e-69 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A0D2QL66 | 1e-162 | A0A0D2QL66_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G007000.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 8e-61 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G007000.1 |
Entrez Gene | 105787448 |