PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G002500.2 | ||||||||
Common Name | B456_003G002500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 269aa MW: 30421 Da PI: 8.4889 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.6 | 4.4e-27 | 203 | 252 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Gorai.003G002500.2 203 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 252 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.94 | 187 | 268 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-22 | 205 | 252 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYEETAAAPL 60 LLLQGVPAHE LFEGRVIGLW LCSFAFHAHR LPRFFFIPSL LSISRNPKLK SIPTLANDLQ 120 LIFQRGCGTE DRGPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS GANSELLKSR 180 QTEQNATGVA VKKKKRADSK DVARIALEDL AKYFDLPIVE ASRNLNVGLT VLKRKCREFG 240 IPRWPHRKIK SLDGLIRDLQ LLSGCDFL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726260.1 | 0.0 | PREDICTED: protein RKD5 | ||||
Swissprot | O81791 | 5e-74 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A0D2QKZ3 | 0.0 | A0A0D2QKZ3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G002500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 4e-69 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G002500.2 |
Publications ? help Back to Top | |||
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