PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G002500.1

Common Name

B456_003G002500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 322aa MW: 36948.4 Da PI: 9.4009

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G002500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.2	5.9e-27	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Gorai.003G002500.1 203 ARIALEDLAKYFDLPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 252 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.929	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-22	205	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYEETAAAPL 60 LLLQGVPAHE LFEGRVIGLW LCSFAFHAHR LPRFFFIPSL LSISRNPKLK SIPTLANDLQ 120 LIFQRGCGTE DRGPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS GANSELLKSR 180 QTEQNATGVA VKKKKRADSK DVARIALEDL AKYFDLPIVE ASRNLNVGLT VLKRKCREFG 240 IPRWPHRKIK SLDGLIRDLQ EEAEQRQQDE AAAYAVAKRR MMLETEKESI EKEPFIELKS 300 ETKRFRQDIF KRRHKARALK N*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016726260.1	0.0	PREDICTED: protein RKD5
Swissprot	O81791	7e-97	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0D2MHH1	0.0	A0A0D2MHH1_GOSRA; Uncharacterized protein
STRING	Gorai.003G002500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-83	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.003G002500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]