PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G265400.1 | ||||||||
Common Name | B456_002G265400, LOC105786575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 329aa MW: 37182.2 Da PI: 8.588 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.6 | 2.4e-32 | 58 | 111 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Gorai.002G265400.1 58 PRLRWTPDLHLRFVHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 111 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.922 | 54 | 114 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-30 | 54 | 112 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-15 | 57 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-23 | 58 | 113 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 59 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MMEENSGTGC SKTVKAETES EENEGESRPK NGGSSSNSTV EENEKKPSVR PYVRSKLPRL 60 RWTPDLHLRF VHAVERLGGQ DRATPKLVLQ LMNIKGLSIA HVKSHLQMYR SKKIDDSGQV 120 ISDHRHLVES GDRNIYNLSQ LPMLQGYSNL HHHHHHHQGD SSSSFYRYGD ASWGNREYSM 180 SRPYTSTSFI NESRPGLHRT VTEKIFSSNW ASYDFKCNQV QPRLGPIETS SMSQNTSLSI 240 HNSNLISQDL KSTKRKTFDC DLDLDLSLRI TAKEDKQQNS EQDDVVSELS LSLYSPSSSS 300 SKLSRLKSEE DHCTKKNARR VSTLDLTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-16 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 59 | 113 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-16 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394941 | 1e-135 | GQ394941.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1964 SSR marker DPL0302 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468535.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_012468536.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0D2QJL8 | 0.0 | A0A0D2QJL8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G265400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 7e-65 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G265400.1 |
Entrez Gene | 105786575 |
Publications ? help Back to Top | |||
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