PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G265300.1

Common Name

B456_002G265300, LOC105786576

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 185aa MW: 20791.8 Da PI: 10.0294

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G265300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	84	119	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k+ +r++ NR +A++sR+R+ +++++Le+k++ Lea Gorai.002G265300.1 84 KKLKRLIANRASAQKSRLRRVEYVDKLEKKAEFLEA 119 899*****************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.1E-9	76	123	No hit	No description
SMART	SM00338	1.8E-9	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.726	82	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-8	84	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-8	84	138	No hit	No description
CDD	cd14703	7.37E-11	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDPKNETSPN AADNQMLNPN AENEDLTLPL ESIQPRRVSL HKRSASDSLA FVKEPNWLAP 60 SSSAQGRLLG GAAGSSSASH MDPKKLKRLI ANRASAQKSR LRRVEYVDKL EKKAEFLEAT 120 VSLVSPRVTS ERKKRMMLLK ENAELKQRIE FYDKLLEKQD AEYKALKEER DLLSFTNLLI 180 QEGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468537.1	1e-131	PREDICTED: basic leucine zipper 19-like isoform X1
Refseq	XP_016727692.1	1e-131	PREDICTED: basic leucine zipper 19-like isoform X1
TrEMBL	A0A0D2QCI6	1e-129	A0A0D2QCI6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8MLJ1	1e-129	A0A1U8MLJ1_GOSHI; basic leucine zipper 19-like isoform X1
TrEMBL	A0A2P5RSC3	1e-129	A0A2P5RSC3_GOSBA; Uncharacterized protein
STRING	Gorai.002G265300.1	1e-130	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18651	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	2e-18	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G265300.1
Entrez Gene	105786576

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]