PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G262900.1
Common NameB456_002G262900, LOC105786552
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 260aa    MW: 31417.6 Da    PI: 8.4689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G262900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52.1e-2435118186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ qe+++ + +r e++ ++ ++k++k+lWe +s  ++e+g++rs++qCk+kw+nl +ryk ++  e++   ++++++p++++l+
  Gorai.002G262900.1  35 QWSIQETKEFLMIRAELDPSFMETKRNKQLWEFISTTLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEEA--KRQQQFPFYNDLQ 118
                         7********************************************************************95..66678******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.59E-213499No hitNo description
PfamPF138371.4E-1935120No hitNo description
PROSITE profilePS500907.3293692IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEGLHHHQYY HRQHHQQQHQ QLAMNVNVDV DRLPQWSIQE TKEFLMIRAE LDPSFMETKR  60
NKQLWEFIST TLKEKGYNRS AEQCKCKWKN LVTRYKGCEM VEEEAKRQQQ FPFYNDLQAI  120
FSARKQTTSK KLCSDEEEDK GRYRGKEKGK KGVSISGSTS ESINDGNDTK EILKCFMRQQ  180
LELEIQWREA LEVRENERRL KEMEWRRTME ALENERVMMD IRWREKEEQR RIREEARSER  240
IDALVTTLLN KLTRDDHMK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468500.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804501e-53TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A0D2RCJ60.0A0A0D2RCJ6_GOSRA; Uncharacterized protein
STRINGGorai.002G262900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-49Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]