PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G251700.1
Common NameB456_002G251700, LOC105786450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 354aa    MW: 40198.2 Da    PI: 5.3341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G251700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-0689113126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +k +lC f+ + G+C  G +CkF+H+
  Gorai.002G251700.1  89 PKSVLCEFYKA-GQCVKGFKCKFSHD 113
                         6899***7777.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-588114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.86888115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003564.5158195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953158196IPR000571Zinc finger, CCCH-type
PfamPF165431.7E-17218295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPPKQASKAD LAKKQKIIED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD PSKTAQKKKK  60
EEEKAKEKEL NDLFKIAVTQ PKVPVGVDPK SVLCEFYKAG QCVKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQETMEDWDQ ATLEKVVESK GKEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYV LKSQMKALIE EESEKTPIED EIENQRAKVK TSTPMTPELF  240
MEWKKKKIAE RDDGLAAQRA ERAKNDRMSG RELFMSDASL FVDDAEAYEK YQREEESDAP  300
ENKANSDSAA PTGPSTAGVP DDDDDELDID ELNELEASLS KTSIQIQEPS AET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468349.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0D2MFU70.0A0A0D2MFU7_GOSRA; Uncharacterized protein
STRINGGorai.002G251700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-170C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]