PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G251700.1 | ||||||||
Common Name | B456_002G251700, LOC105786450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 40198.2 Da PI: 5.3341 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k +lC f+ + G+C G +CkF+H+ Gorai.002G251700.1 89 PKSVLCEFYKA-GQCVKGFKCKFSHD 113 6899***7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.4E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5 | 158 | 195 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.953 | 158 | 196 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 1.7E-17 | 218 | 295 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MPPKQASKAD LAKKQKIIED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD PSKTAQKKKK 60 EEEKAKEKEL NDLFKIAVTQ PKVPVGVDPK SVLCEFYKAG QCVKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DQETMEDWDQ ATLEKVVESK GKEYQQNKPT DIVCKYFLEA VEKKQYGWFW 180 VCPNGGKDCH YRHALPPGYV LKSQMKALIE EESEKTPIED EIENQRAKVK TSTPMTPELF 240 MEWKKKKIAE RDDGLAAQRA ERAKNDRMSG RELFMSDASL FVDDAEAYEK YQREEESDAP 300 ENKANSDSAA PTGPSTAGVP DDDDDELDID ELNELEASLS KTSIQIQEPS AET* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468349.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 11-like | ||||
Swissprot | Q0JHZ2 | 0.0 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | A0A0D2MFU7 | 0.0 | A0A0D2MFU7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G251700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4874 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-170 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G251700.1 |
Entrez Gene | 105786450 |
Publications ? help Back to Top | |||
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