PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G247000.1
Common NameB456_002G247000, LOC105786410
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 354aa    MW: 39031.6 Da    PI: 6.7458
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G247000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27101183271
             E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Gorai.002G247000.1 101 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpgnniaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 183
                         689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.4E-1353353IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4696189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.1E-36100183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-25102183IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.71E-22103184IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.20E-44188291IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.54E-43190302No hitNo description
SMARTSM011387.3E-73190351IPR014889Transcription factor DP, C-terminal
PfamPF087814.2E-41191319IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVTGSNSVQN HNHQEDGDQN QTKRGASRSW GTTVSGQSVS TSGSVGSPSS RCELAMATPA  60
SENTFLRLNH LDIHGDDAGS QGAVGSKKKK RGQRAVGGDK SGRGLRQFSM KVCEKVESKG  120
RTTYNEVADE LVAEFTDPGN NIASPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ  180
WKGLPRTSLS DIEDLKTERL GLRNRIEKKA AYLHELEEQF VGLQNLIQRN EQLYSSGNPP  240
NGGVALPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKFCERPGSD  300
EMAHNFSADG EGSSMSAMYQ QQIVPPPMTN TPGRPPTSPP LPGILKARVK HEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-4094188193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.21561e-110flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488306871e-110
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468272.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-168DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D2RC730.0A0A0D2RC73_GOSRA; Uncharacterized protein
STRINGGorai.002G247000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-153Transcription factor DP
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]