PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.002G244000.1 | ||||||||
Common Name | B456_002G244000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22926.6 Da PI: 6.5646 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3.2e-20 | 67 | 120 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++ql+ Le+ F+++++++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Gorai.002G244000.1 67 KKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 120 66779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.2e-39 | 66 | 156 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+++q+ +LE+sF+ee+kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk++yd ++ e+++L++ev eL+ l Gorai.002G244000.1 66 NKKKRLTSDQLDSLERSFQEENKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHSYNTLKHEYDIISIEKQKLQDEVMELKGML 156 59*************************************************************************************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-20 | 54 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-19 | 64 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-17 | 67 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 68 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.22E-16 | 70 | 123 | No hit | No description |
PRINTS | PR00031 | 2.9E-5 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.9E-5 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-8 | 122 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDWDGTIRPF ISRLEPSLNF PSNYNYNQYP EGVEDMNNQG FEEAGNGLVP DLNMNGFMNN 60 GKGNNNKKKR LTSDQLDSLE RSFQEENKLD PDRKMKLSKE LGLQPRQIAV WFQNRRARWK 120 AKQLEHSYNT LKHEYDIISI EKQKLQDEVM ELKGMLVEQA TRNQVSTVYK EISGGEIIES 180 SSIRSSNKTS IAGNDYIR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584376 | 3e-42 | JX584376.1 Gossypium hirsutum clone NBRI_GE17666 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469169.1 | 1e-124 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 2e-43 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A0D2RC05 | 1e-144 | A0A0D2RC05_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G244000.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-41 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.002G244000.1 |
Publications ? help Back to Top | |||
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