PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G242000.2
Common NameB456_002G242000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 452aa    MW: 51677.1 Da    PI: 7.6354
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G242000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.23.9e-27126201175
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtses 75 
                         rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +++g++rs k+C+ek+enl k+ykk+keg+ +r++++
  Gorai.002G242000.2 126 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEDHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDDD 201
                         8***********************************99899*****************************997665 PP
2trihelix47.44.9e-15325397283
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                         W++ ev  Li++++ me     g++++ lWeev++km+  gfe+s+ +Ck kwe++  +  k k+++kkr    +++c y++
  Gorai.002G242000.2 325 WQETEVSRLIQLKTTME-----GCSEEILWEEVAAKMACLGFEKSALMCKTKWESIGAYLMKNKDSNKKR----KENCDYYH 397
                         ************99987.....678888****************************************97....56899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.043123186IPR001005SANT/Myb domain
PROSITE profilePS500906.98125184IPR017877Myb-like domain
CDDcd122032.93E-19126191No hitNo description
PfamPF138372.1E-17126198No hitNo description
PROSITE profilePS500906.353317376IPR017877Myb-like domain
SMARTSM0071717321378IPR001005SANT/Myb domain
PfamPF138371.6E-11323398No hitNo description
CDDcd122036.85E-14325383No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEMENHHHHH HQHHQYGMPD LRQLLNGRPS HFQTVQQGSE LFSSGDRNLP PLQHHHQFDM  60
MQMVGRQVVG HELMPRGGLH HEFSSAAAAT PTAAMAAAVN SGSTPSASCG FEGEAIAFGG  120
DGGTGRWPRQ ETLTLLEIRS RLDPKFKEAN QKGPLWDEVS RIMCEDHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRQDD DNDLSTEMEI NGGSSEKRKK KRSGGGSSKC WKAKIKEFID  240
LQMRKLMDRQ ETWLEKLTKT LEEKEKERVL REEQWRKEEA ARIEREQKLW AKERARIEAR  300
DSALMEALQN LTGKQLKEIV KPDDWQETEV SRLIQLKTTM EGCSEEILWE EVAAKMACLG  360
FEKSALMCKT KWESIGAYLM KNKDSNKKRK ENCDYYHNNN EPLYSDSVSH SNATAGAAGN  420
GVNDSCFRFL MADGENYWES YGLKLNKGEN Q*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468199.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS02e-58PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2NS880.0A0A0D2NS88_GOSRA; Uncharacterized protein
STRINGGorai.002G242000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.16e-43Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]