PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G242000.1
Common NameB456_002G242000, LOC105786360
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 618aa    MW: 70698.8 Da    PI: 7.5281
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G242000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.42.3e-29227312187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +++g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gorai.002G242000.1 227 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEDHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 312
                         8***********************************99899*****************************98..55667*******85 PP
2trihelix46.87.8e-15491563283
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                         W++ ev  Li++++ me     g++++ lWeev++km+  gfe+s+ +Ck kwe++  +  k k+++kkr    +++c y++
  Gorai.002G242000.1 491 WQETEVSRLIQLKTTME-----GCSEEILWEEVAAKMACLGFEKSALMCKTKWESIGAYLMKNKDSNKKR----KENCDYYH 563
                         ************99987.....678888****************************************97....56899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.043224287IPR001005SANT/Myb domain
PROSITE profilePS500906.98226285IPR017877Myb-like domain
CDDcd122037.60E-21227292No hitNo description
PfamPF138371.9E-19227313No hitNo description
PROSITE profilePS500906.353483542IPR017877Myb-like domain
SMARTSM0071717487544IPR001005SANT/Myb domain
PfamPF138372.5E-11489564No hitNo description
CDDcd122033.13E-15491549No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MCPSVTLSFL LLLLLLHAAI RVFLPPLSFY FVHTSEKYPF FFSLSRTLPQ CHYHCIRTFI  60
HIWDHCPLLQ YSSFFVKDTI PTPLLFLDSL LSSLHYSFHS DMEMENHHHH HHQHHQYGMP  120
DLRQLLNGRP SHFQTVQQGS ELFSSGDRNL PPLQHHHQFD MMQMVGRQVV GHELMPRGGL  180
HHEFSSAAAA TPTAAMAAAV NSGSTPSASC GFEGEAIAFG GDGGTGRWPR QETLTLLEIR  240
SRLDPKFKEA NQKGPLWDEV SRIMCEDHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD  300
GKHYRFFRQL EALYGESSNS VSGHNQFTGN GFGFHGTQNC NIGHSQKLCD SLSLSNSFEF  360
EPSSSDDNDL STEMEINGGS SEKRKKKRSG GGSSKCWKAK IKEFIDLQMR KLMDRQETWL  420
EKLTKTLEEK EKERVLREEQ WRKEEAARIE REQKLWAKER ARIEARDSAL MEALQNLTGK  480
QLKEIVKPDD WQETEVSRLI QLKTTMEGCS EEILWEEVAA KMACLGFEKS ALMCKTKWES  540
IGAYLMKNKD SNKKRKENCD YYHNNNEPLY SDSVSHSNAT AGAAGNGVND SCFRFLMADG  600
ENYWESYGLK LNKGENQ*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the early-developing flower, in four zones between the initiating sepals and in their developing margins. Later detected in the margins of expanding sepals, petals and stamens, and in the leaf margins. {ECO:0000269|PubMed:15269176}.
UniprotTISSUE SPECIFICITY: Confined to flowers, at low levels. Also present in 7-days-old seedlings. Barely detectable in other tissues such as young seedlings, roots, stems, leaves and siliques (PubMed:15269176). Expressed in flower primordia, more precisely between newly arisen sepal primordia and also at the basal margins of developing sepals (PubMed:25697797). {ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:25697797}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468199.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-131PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2MFC40.0A0A0D2MFC4_GOSRA; Uncharacterized protein
STRINGGorai.002G242000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-108Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]