PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G237900.1

Common Name

B456_002G237900, LOC105786322

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 285aa MW: 31725.8 Da PI: 6.7022

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G237900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.4	1e-31	38	145	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k ltpsdv+k++rlv+pk++ae+h + + +++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F Gorai.002G237900.1 38 FEKPLTPSDVGKLNRLVIPKQHAEKHfplggsggdSVVDNKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDIILF 128 99**************************99887444558889********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 k+++ + ++l+++++r+ Gorai.002G237900.1 129 KRHRLNAERLFIGWRRR 145 75559999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-40	31	146	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-30	34	143	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.36E-28	36	136	No hit	No description
SMART	SM01019	1.8E-25	38	146	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-28	38	145	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.479	38	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEPTQSYQPS MSFFSNIPSS HIEDEYEQFD DHEKEPMFEK PLTPSDVGKL NRLVIPKQHA 60 EKHFPLGGSG GDSVVDNKGL LLSFEDESGK CWRFRYSYWN SSQSYVLTKG WSRYVKEKQL 120 DAGDIILFKR HRLNAERLFI GWRRRGAALD GGNAELGNNS GGVRGGDNGG WSSSRGLYQG 180 NPYPGHIQGQ CHGANVPYQH DCLHAGSMAE NQGPGGNPKR LLRLFGVNLE CHLDDSSEPS 240 TPDSSSVSSQ GPTSTHHFYS QSYTSNYMDI GFSRDMNQMN NHRA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	8e-48	35	151	11	124	DNA-binding protein RAV1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468154.1	0.0	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q8GYJ2	1e-68	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A0D2QI58	0.0	A0A0D2QI58_GOSRA; Uncharacterized protein
STRING	Gorai.002G237900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	5e-66	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G237900.1
Entrez Gene	105786322

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]