PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G234400.1

Common Name

B456_002G234400, LOC105786289

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 331aa MW: 36276.1 Da PI: 8.7091

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G234400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	97.8	1.2e-30	162	218	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rak+ e+kl +k+rkpy+h SRh hA+rRpRg+gGrF Gorai.002G234400.1 162 DGPIYVNAKQYNGILRRRQSRAKAVLENKL-TKARKPYMHYSRHLHAMRRPRGCGGRF 218 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.8E-34	160	221	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.446	161	221	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-21	164	186	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-26	164	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-21	195	218	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAMQTLHVKE HDGIVHNPMG QLAPVPSQPW WSALGSQSSI YGESCGQLKN LLMEHPSNGD 60 HLTCTKQAGR VTEQGLNKGN PAHFTIFPGD GKCSGDGQKS PTVISLQSVP SEQHSRFELG 120 CGQPPMVCAK YPYMDQCYGV FSTYGPPVSG RVMLPLNIAS EDGPIYVNAK QYNGILRRRQ 180 SRAKAVLENK LTKARKPYMH YSRHLHAMRR PRGCGGRFLN TKTGKDEKET KKYVEGKDLH 240 ITGSQNSEVL QSDSGTLNSS KEAIGGGLTL SGSEVTSMYS REELEHNFPI NHLGLSFHSF 300 PVMMENGSGS VMPNRWVAPA DHCLQPIPRD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-16	162	222	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468119.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A0D2QB35	0.0	A0A0D2QB35_GOSRA; Uncharacterized protein
STRING	Gorai.002G234400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-53	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Gorai.002G234400.1
Entrez Gene	105786289

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]